Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006985.1 Kokia drynarioides strain JFW-HI SEQ_121591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7172
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33


Found at i:419 original size:25 final size:25

Alignment explanation


    Indices: 391--452  Score: 67
    Period size: 25  Copynumber: 2.5  Consensus size: 25

        381 GTAATTCACT

                        *            
        391 AAATCTATTAATGGAAAAAGATTTA
          1 AAATCTATTAATAGAAAAAGATTTA

                                      *
        416 AAAT-TCA-TAAGTAGAAAAAGATTTC
          1 AAATCT-ATTAA-TAGAAAAAGATTTA

                         
        441 AAA-CTATTAATA
          1 AAATCTATTAATA

        453 AATAGATTCG


Statistics
Matches: 31,  Mismatches: 2, Indels: 9
        0.74            0.05        0.21

Matches are distributed among these distances:
  24    7  0.23
  25   24  0.77

ACGTcount: A:0.53, C:0.06, G:0.10, T:0.31


Consensus pattern (25 bp):   
AAATCTATTAATAGAAAAAGATTTA
Done.