Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006986.1 Kokia drynarioides strain JFW-HI SEQ_121592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6324
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35


Found at i:5384 original size:25 final size:25

Alignment explanation


    Indices: 5324--5384  Score: 65
    Period size: 25  Copynumber: 2.5  Consensus size: 25

       5314 GAATCTATTT

                                    *
       5324 ATTAATAG-TTTGAAATCTTTTTCT
          1 ATTAATAGATTTGAAATCTTTTTCC

                          *            
       5348 ACTT-AT-GAATTTTAAATCTTTTTCC
          1 A-TTAATAG-ATTTGAAATCTTTTTCC

                        
       5373 ATTAATAGATTT
          1 ATTAATAGATTT

       5385 AGTGAATTAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 9
        0.73            0.05        0.22

Matches are distributed among these distances:
  23    1  0.03
  24    5  0.17
  25   23  0.77
  26    1  0.03

ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52


Consensus pattern (25 bp):   
ATTAATAGATTTGAAATCTTTTTCC

Done.