Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006990.1 Kokia drynarioides strain JFW-HI SEQ_121596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2070
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37


Found at i:1127 original size:20 final size:21

Alignment explanation


    Indices: 1104--1142  Score: 71
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1094 AAATAATTTG

                                 
       1104 TTAAAATATA-AATTATATCA
          1 TTAAAATATATAATTATATCA

                               
       1124 TTAAAATATATAATTATAT
          1 TTAAAATATATAATTATAT

       1143 ATGTATGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   10  0.56
  21    8  0.44

ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44


Consensus pattern (21 bp):   
TTAAAATATATAATTATATCA

Done.