Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006997.1 Kokia drynarioides strain JFW-HI SEQ_121603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3483
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Found at i:503 original size:216 final size:216
Alignment explanation
Indices: 130--1255 Score: 1377
Period size: 216 Copynumber: 5.2 Consensus size: 216
120 AACATTCCAT
* *
130 GCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
* * * * *
194 TTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTTACCA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* *
259 GTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTTTTCG
131 GTTCTTTTATAAATTC-GGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCG
*
323 AACATTCCATGCGAGAGAAATC
195 AACATTCCATGCGAGGGAAATC
* * * *
345 GCATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCATTAAAGTAAAAACTT
1 GCATCATTTG-GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTT
* * * *
409 ATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCCGAACCTT-TCGAACTTTTAC
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAA-CTTGTCAAACTTTTAC
* * * * *
473 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTT
129 GAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTC
* * ** *
538 GAACATTACACGCTCGGGAAGTC
194 GAACATTCCATGCGAGGGAAATC
* * * * *
561 GCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAAAACTT
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGT-AAACAAGTTTTGACCTTTCAATTAAAAACTT
* * * * * ** *
626 ATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* ** * * *
691 AGTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGATTAATTTTTCG
130 AGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCG
*
756 AACATTCCATGCGAGGGAAAAC
195 AACATTCCATGCGAGGGAAATC
* *
778 ACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTG
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
* * * * **
843 TTAACGTGAGAATTCTGTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGA
66 TTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * * * *
908 TTTCTTTTA-AAGCTTTGGTTCCTTAAAGTATTCAAGCCGATCCAATCCTTCGAGCAA-TTTTCT
131 GTTCTTTTATAA-ATTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTC-
* ** * *
971 GAACATTACATGCTTGGGAAGTT
194 GAACATTCCATGCGAGGGAAATC
* * * *
994 GCATCATTTGATCT-AATAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
1 GCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTT
**
1058 ATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
65 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
1123 AGTTCTTTCT-TAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCTTTCGAGTAACTTTCC
130 AGTTCTTT-TATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTC
* * *
1187 AAACATTCCATGCAAGAGAAATC
194 GAACATTCCATGCGAGGGAAATC
* *
1210 GCATCATTTGGTCTAAATAGTTTTTAATTTTGTAAACATGTTTTGA
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
1256 TTTTGGTTCT
Statistics
Matches: 762, Mismatches: 135, Indels: 27
0.82 0.15 0.03
Matches are distributed among these distances:
214 3 0.00
215 31 0.04
216 530 0.70
217 198 0.26
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGA
ACATTCCATGCGAGGGAAATC
Found at i:800 original size:433 final size:429
Alignment explanation
Indices: 8--1256 Score: 1688
Period size: 433 Copynumber: 2.9 Consensus size: 429
1 AATTGTT
* * *
8 TCTCTCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTC-TTTATTAA-ATC
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTC
* * * *
71 TGGTTCCTTAAATTGTTCAAGACGATCCATTCCTGCGAGTAATTTTTTGAACATT----C-C---
65 -GGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACAGCTCGGG
** * *
128 -A-TGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAA
129 AAGTGCATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAA
* * * *
190 CTTATTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTT
193 CTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTT
* *
255 ACCAGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTT
258 ACGAGTTCTTTTTTAAATTCT-GTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTT
319 TTCGAACATTCCATGCGAGAGAAATCGCATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAAACA
322 TTCGAACATTCCATGCGAGAGAAATCGCATCATTTG-GTCTAAATAGTTTTTCATTTTGTAAACA
*
383 AGTTTTGATCATTAAAGTAAAAACTTATTTACGTGAGAATTATG
386 AGTTTTGATCATTAAAGTAAAAACTTATTAACGTGAGAATTATG
* *
427 TCTCTCTTGGTTCTTGGACGAACTTCCGAACCTT-TCGAACTTTTACGAGTTCTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
*
491 GGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTTGAACATTACACGCTCGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACA-GCTCGGG
*
556 AAGTCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAA
129 AAGT-GCATCATTT-GTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGCCTTTGAATTAAA
* * * * * ** *
621 AACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTT
191 AACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTT
* * * *
686 TTACGAGTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGATTAATT
256 TTACGAGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATT
* * *
751 TTTCGAACATTCCATGCGAGGGAAAACACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
321 TTTCGAACATTCCATGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
* * * * * *
816 AGTTTTGACCTTTCAATTAAAAACTTGTTAACGTGAGAATTCTG
386 AGTTTTGATCATTAAAGTAAAAACTTATTAACGTGAGAATTATG
* * *
860 TCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGATTTCTTTTA-AAGCTTT
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-CTTC
* * * *
924 GGTTCCTTAAAGTATTCAAGCCGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTTGGG
65 GGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACA-GCTCGGG
*
989 AAGTTGCATCATTTGATCT-AATAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAA
129 AAG-TGCATCATTTG-TCTAAAT-AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAA
1053 AACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTT
191 AACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTT
* * * * *
1118 TTACGAGTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCTTTCGAGTAACT
256 TTACGAGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATT
* * * *
1183 TTCCAAACATTCCATGCAAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTAATTTTGTAAACA
321 TTTCGAACATTCCATGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
*
1248 TGTTTTGAT
386 AGTTTTGAT
1257 TTTGGTTCTT
Statistics
Matches: 723, Mismatches: 83, Indels: 35
0.86 0.10 0.04
Matches are distributed among these distances:
419 96 0.13
420 9 0.01
424 1 0.00
425 1 0.00
429 1 0.00
430 1 0.00
431 22 0.03
432 221 0.31
433 364 0.50
434 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (429 bp):
TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACAGCTCGGGAA
GTGCATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
ATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
AGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCG
AACATTCCATGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
TGATCATTAAAGTAAAAACTTATTAACGTGAGAATTATG
Found at i:1226 original size:649 final size:636
Alignment explanation
Indices: 1--1245 Score: 1590
Period size: 649 Copynumber: 1.9 Consensus size: 636
* * * * *
1 AATTGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTATT
1 AATTGTTTCTCTCTCGGTTGTCGGAGGAACTTTCAAACTTGTAAAACTTTTACGAGTTCTTTATT
* * * *
66 AAATCTGGTTCCTTAAATTGTTCAAGACGATCCATTCCTGCGAGTAATTTTTTGAACATTCCATG
66 AAATCTGATTCCTTAAAGTGTTCAAAACGATCCATTCCTGCGAGTAATTTTTCGAACATTCCATG
*
131 CATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAACTTATT
131 CATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGACCTATCAATTAAAAACTTATT
* * * * *
196 TATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTTACCAGT
196 AACGTGAGAATTCTGTCTCGCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTGTTACCAGT
* * *
261 TCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAAC
261 TCTCTTTTAAATCTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGAAATTTTTCGAAC
* *
326 ATTCCATGCGAGAGAAATCGCATCATTGAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
326 ATTACATGCGAGAGAAATCGCATCATTGAGTCTAAATAATTTTTCATTTTGTAAACAAGTTTTGA
* *
391 TCATTAAAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCCGA
391 CCATTAAAGTAAAAACTTATTTACATGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * *
456 ACCTTTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAAT
456 ACCTTTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGACGATCCAAT
* *** ** * *
521 CCTTCGAGTAATTTTTTGAACATTACACGCTCGGGAAGTCGCATCATTTAGTCTAAATAGTTTGT
521 CCTTCGAGTAACTTTCCAAACATTACACGCAAGAGAAATCGCATCATTTAGTCTAAATAGTTTGT
*
586 CATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAG
586 AATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAG
* *
637 AATTGTTTCTCTCTCGGTTGTCGGAGGAGC-TTCTAAACTTGTAAAACTTTTACGAGTTCTTTTT
1 AATTGTTTCTCTCTCGGTTGTCGGAGGAACTTTC-AAACTTGTAAAACTTTTACGAGTTCTTTAT
* * *
701 TAAATTCT-ATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGATTAATTTTTCGAACATTCCA
65 TAAA-TCTGATTCCTTAAAGTGTTCAAAACGATCCATTCCTGCGAGTAATTTTTCGAACATTCCA
*
765 TGCGAGGGAAAACACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTC
129 T------G------CATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGACCTATC
* * * **
830 AATTAAAAACTTGTTAACGTGAGAATTCTGTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGT
181 AATTAAAAACTTATTAACGTGAGAATTCTGTCTCGCTTGGTTCTTGGACAAACTTCCGAACTTGT
* * * *
895 CAAACTTTTACGA-TT-TCTTTTAAAGCTTTGGTTCCTTAAAGTATTCAAGCCGATCCAATCCTT
246 CAAACTGTTACCAGTTCTCTTTTAAA--TCTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTT
* ** * * *
958 CGAGCAA-TTTTCTGAACATTACATGCTTGGGAAGTTGCATCATTTGA-TCT-AATAATTTTGTC
309 CGAGAAATTTTTC-GAACATTACATGCGAGAGAAATCGCATCA-TTGAGTCTAAATAATTTT-TC
* * * * * * *
1020 ATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCTTG
371 ATTTTGTAAACAAGTTTTGACCATTAAAGTAAAAACTTATTTACATGAGAATTATGTCTCTCTTG
*
1085 GTTGTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTTCCTT
436 GTTCTTGGACGAACTTCCGAACCTT-TCAAACTTTTACGAGTTCTTT-TATAAATCCGGTTCCTT
* * * * *
1148 AAAGTGTTCAAGACGATCCATTCTTTCGAGTAACTTTCCAAACATTCCATGCAAGAGAAATCGCA
499 AAAGTATTCAAGACGATCCAATCCTTCGAGTAACTTTCCAAACATTACACGCAAGAGAAATCGCA
* *
1213 TCATTTGGTCTAAATAGTTTTTAATTTTGTAAA
564 TCATTTAGTCTAAATAGTTTGTAATTTTGTAAA
1246 CATGTTTTGA
Statistics
Matches: 516, Mismatches: 71, Indels: 31
0.83 0.11 0.05
Matches are distributed among these distances:
635 3 0.01
636 107 0.21
637 3 0.01
642 1 0.00
647 8 0.02
648 37 0.07
649 352 0.68
650 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (636 bp):
AATTGTTTCTCTCTCGGTTGTCGGAGGAACTTTCAAACTTGTAAAACTTTTACGAGTTCTTTATT
AAATCTGATTCCTTAAAGTGTTCAAAACGATCCATTCCTGCGAGTAATTTTTCGAACATTCCATG
CATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGACCTATCAATTAAAAACTTATT
AACGTGAGAATTCTGTCTCGCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTGTTACCAGT
TCTCTTTTAAATCTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGAAATTTTTCGAAC
ATTACATGCGAGAGAAATCGCATCATTGAGTCTAAATAATTTTTCATTTTGTAAACAAGTTTTGA
CCATTAAAGTAAAAACTTATTTACATGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACCTTTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGACGATCCAAT
CCTTCGAGTAACTTTCCAAACATTACACGCAAGAGAAATCGCATCATTTAGTCTAAATAGTTTGT
AATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAG
Found at i:1390 original size:176 final size:176
Alignment explanation
Indices: 1082--1408 Score: 437
Period size: 176 Copynumber: 1.9 Consensus size: 176
1072 TGTTTCTCTC
* * *
1082 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTACCT
* * * * *
1147 TAAAGTGTTCAAGACGATCCATTCTTTCGAGTAACTTTCCAAACATTCCATGCAAGAGAAATCGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAACTTTCCAAACATTACATGCAAGAGAAATCGC
*
1212 ATCATTTGGTCTAAATAGTTTTTAATTTTGTAAACATGTTTTGATT
131 ATCATTTGGTCTAAAAAGTTTTTAATTTTGTAAACATGTTTTGATT
* * *
1258 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTC-TT-TTACAGCTTCGGTAC
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCTTA-A-ATCCGGTAC
* * * * *
1321 CTTAAAGTATTCAAGACGATCCAATCCTT-GAAGCAATTTTTCGAACATTACATGCTCAG-GAAG
64 CTTAAAGTATTCAAGACGATCCAATCCTTCG-AGCAACTTTCCAAACATTACATGC-AAGAGAAA
1384 TCGCATCATTTGGTCTAAAAAGTTT
127 TCGCATCATTTGGTCTAAAAAGTTT
1409 GTCATATGAA
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
174 3 0.02
175 4 0.03
176 121 0.93
177 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (176 bp):
TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTACCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAACTTTCCAAACATTACATGCAAGAGAAATCGC
ATCATTTGGTCTAAAAAGTTTTTAATTTTGTAAACATGTTTTGATT
Found at i:1611 original size:391 final size:392
Alignment explanation
Indices: 866--1645 Score: 1113
Period size: 391 Copynumber: 2.0 Consensus size: 392
856 TCTGTCTCTC
*** * * *
866 TTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGATTTCTTTTAAAGCTTTGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAAAGCTTCGGTACCT
* ** *
931 TAAAGTATTCAAGCCGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTTGGGAAGTTGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTCAGGAAGTCGC
* * * * *
996 ATCATTTGATCTAATAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
131 ATCATTTGATCTAAAAAGTTTGTCATTATGAAAACAAGTTTTGGCCTTTGAAATAAAAACTTATT
* *
1061 TATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
196 TATACGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * * *
1126 TCTTTCTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCTTTCGAGTAACTTTCCAAAC
261 TCTTTCTTAAATCCGGTTCCTTAAAGTATTCAAGACGATACAATCCTTCGAATAACTTTCCAAAC
* * * * *
1191 ATTCCATGCAAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTA-ATTTTGTAAACATGTTTTG
326 ATTACATGCAAGAGAAATCGCACCATTTGGTCTAAAAAG-TTTGACATTTTGTAAACAAGTTTTG
1255 ATT
390 ATT
* *
1258 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAGCTTCGGTACCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAAAGCTTCGGTACCT
1323 TAAAGTATTCAAGACGATCCAATCCTT-GAAGCAATTTT-TCGAACATTACATGCTCAGGAAGTC
66 TAAAGTATTCAAGACGATCCAATCCTTCG-AGCAATTTTCT-GAACATTACATGCTCAGGAAGTC
* *
1386 GCATCATTTGGTCTAAAAAGTTTGTCA-TATGAAAACTAGTTTTGGCCTTTGAAATAAAAACTTA
129 GCATCATTTGATCTAAAAAGTTTGTCATTATGAAAACAAGTTTTGGCCTTTGAAATAAAAACTTA
*
1450 TTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
194 TTTATACGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * *
1515 GTTCTTT-TATAAATCCGGTTCCTTAAAGTATTCAAGACGATATAATCCTTC-AATCAATTTTCT
259 GTTCTTTCT-TAAATCCGGTTCCTTAAAGTATTCAAGACGATACAATCCTTCGAAT-AACTTTCC
* ** * *
1578 GAACATTACATGCTTGGGAAGTCGCACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTT
322 AAACATTACATGCAAGAGAAATCGCACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTT
1643 TTG
387 TTG
1646 GTCTTTGAAT
Statistics
Matches: 343, Mismatches: 40, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
390 7 0.02
391 200 0.58
392 136 0.40
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (392 bp):
TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAAAGCTTCGGTACCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTCAGGAAGTCGC
ATCATTTGATCTAAAAAGTTTGTCATTATGAAAACAAGTTTTGGCCTTTGAAATAAAAACTTATT
TATACGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
TCTTTCTTAAATCCGGTTCCTTAAAGTATTCAAGACGATACAATCCTTCGAATAACTTTCCAAAC
ATTACATGCAAGAGAAATCGCACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTTTGA
TT
Found at i:1738 original size:216 final size:216
Alignment explanation
Indices: 1258--2286 Score: 1262
Period size: 216 Copynumber: 4.8 Consensus size: 216
1248 TGTTTTGATT
* * * * ** * *
1258 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAGCTTCGGTACCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
* * *
1323 TAAAGTATTCAAGACGATCCAATCCTTGAAGCAATTTT-TCGAACATTACATGCTCA-GGAAGTC
66 TAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCT-GAACATTACATGCT-AGGGAAGTC
* * * * *
1386 GCATCATTTGGTCTAAAAAGTTTGTCA-TATGAAAACTAGTTTTGGCCTTTGAAATAAAAACTTA
129 GCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
1450 TTTATGCGACAATTGTTTCTCTC
194 TTTACGTGACAATTGTTTCTCTC
1473 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
** * *
1538 TAAAGTATTCAAGACGATATAATCCTTCAATCAATTTTCTGAACATTACATGCTTGGGAAGTCGC
66 TAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCTGAACATTACATGCTAGGGAAGTCGC
* ** *
1603 ACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
131 ATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
1668 TACGTAGA-AATTGTTTCTCTC
196 TACGT-GACAATTGTTTCTCTC
* * * * * *
1689 TTGGTTGTGGGACGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTTTAAATCCAGATCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
* * * * * * * *
1754 TAAAATGTTCAAGACAATCCATTCCTTCGAGT-AATTTTCCGAACATTCCATGCGAGGGAAATCG
66 TAAAGTATTCAAGACGATCCATTCCTTC-AATCAATTTTCTGAACATTACATGCTAGGGAAGTCG
* **
1818 CATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
130 CATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
1883 TTACGTGACAATTGTTTCTCTC
195 TTACGTGACAATTGTTTCTCTC
* * *
1905 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAATTCTGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
* * ** ** * * * * *
1970 TAAAATATTCAAGCCGATATATTCCTTTGAGCAATTTTTTGAACATTACATGCTTGGGGAGTTGC
66 TAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCTGAACATTACATGCTAGGGAAGTCGC
* * * * *
2035 ATCATTTGATCTAACAATTTTTTCATTTTGTAAATAAGTTTTGGCCTTAGAATTAAAAACTTATT
131 ATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
* *
2100 TATGTGAGAATTGTTTCTCTC
196 TACGTGACAATTGTTTCTCTC
* *
2121 TTTGTTGTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATCCGGTTCC
* * * ** * * ** *
2185 TTAAAGTGTTCTAGACGATCCATTCCTTCGAGT-AATTTTCAAAACATTTCATGCGAGAAAAATC
65 TTAAAGTATTCAAGACGATCCATTCCTTC-AATCAATTTTCTGAACATTACATGCTAGGGAAGTC
*
2249 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 GCATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACA
2287 TATTTTGATC
Statistics
Matches: 692, Mismatches: 113, Indels: 17
0.84 0.14 0.02
Matches are distributed among these distances:
215 139 0.20
216 548 0.79
217 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCT
TAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCTGAACATTACATGCTAGGGAAGTCGC
ATCATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
TACGTGACAATTGTTTCTCTC
Found at i:2039 original size:823 final size:824
Alignment explanation
Indices: 433--2077 Score: 2140
Period size: 823 Copynumber: 2.0 Consensus size: 824
423 TATGTCTCTC
* * * *
433 TTGGTTCTTGGACGAACTTCCGAACCTTTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACCTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTACCT
* * * *
498 TAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTTGAACATTACACGCTCGGGAAGTCGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACACGCTCAGGAAGTCGC
* * *
563 ATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAACAAGTCTTGGCCTTTGAATTAAAAACTTAT
131 ATCATTTAGTCTAAAAAGTTTGTCATTATGTAAAACAAGTCTTGGCCTTTGAAATAAAAACTTAT
* * * * *
628 TTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACGAG
196 TTACACGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCAAACTTGTAAAACTTTTACGAG
* * * * * * * * *
693 TTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGATTAATTTTTCGAA
261 TTCTTTTATAAATCCGATTCCTTAAAGTATTCAAAACGATACAATCCTTCAATCAATTTTTCGAA
* * * **
758 CATTCCATGCGAGGGAAAACACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
326 CATTACATGCGAGGGAAAACACACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTTTG
* * *
823 ACCTTTCAATTAAAAACTTGTTAACGTGAGAATTCTGTCTCTCTTGGTTCTTGGACGAACTTTTG
391 ACCTTTCAATTAAAAACTTATTAACGTGAGAATTCTGTCTCTCTTGGTTCTGGGACGAACTTCTG
*** * * * *
888 AACTTGTCAAACTTTTACGATTTCTTTTAAAGCTTTGGTTCCTTAAAGTATTCAAGCCGATCCAA
456 AACTTGTCAAACTTTTACGATTTCTTTTAAA-CTCCAGATCCTTAAAATATTCAAGACAATCCAA
* ** * *
953 TCCTTCGAGCAATTTTCTGAACATTACATGCTTGGGAAGTTGCATCATTTGATCTAATAATTTTG
520 TCCTTCGAGCAATTTTCCGAACATTACATGCGAGGGAAATCGCATCATTTGATCTAATAATTTTG
** * *
1018 TCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCTCT
585 TCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTCTCT
*
1083 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCTT
650 TGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTAAATCCGGTTCCTT
* * * * *
1148 AAAGTGTTCAAGACGATCCATTCTTTCGAGTAACTTTCCAAACATTCCATGCAAGAGAAATCGCA
715 AAAATATTCAAGACGATACATTCTTTCGAGCAACTTTCCAAACATTACATGCAAGAGAAATCGCA
* *
1213 TCATTTGGTCTAA-ATAGTTTTTAATTTTGTAAACATGTTTTGATT
780 TCATTTGATCTAACA-AGTTTTTAATTTTGTAAACAAGTTTTGATT
* *
1258 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAGCTTCGGTACCT
1 TTGGTTCTTGGACGAACTTCCAAACCTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTACCT
*
1323 TAAAGTATTCAAGACGATCCAATCCTT-GAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCG
66 TAAAGTATTCAAGACGATCCAATCCTTCG-AGCAATTTTTCGAACATTACACGCTCAGGAAGTCG
* * *
1387 CATCATTTGGTCTAAAAAGTTTGTCA-TATG-AAAACTAGTTTTGGCCTTTGAAATAAAAACTTA
130 CATCATTTAGTCTAAAAAGTTTGTCATTATGTAAAACAAGTCTTGGCCTTTGAAATAAAAACTTA
** * * * *
1450 TTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
195 TTTACACGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCAAACTTGTAAAACTTTTACGA
* * *
1515 GTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGACGATATAATCCTTCAATCAA-TTTTCTG
260 GTTCTTTTATAAATCCGATTCCTTAAAGTATTCAAAACGATACAATCCTTCAATCAATTTTTC-G
** ** *
1579 AACATTACATGCTTGGGAAGTCGCACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTT
324 AACATTACATGCGAGGGAAAACACACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTT
** * * * * *
1644 TGGTCTTTGAATTAAAAACTTATTTACGT-AGAAATTGTTTCTCTCTTGGTTGTGGGACGAACTT
389 TGACCTTTCAATTAAAAACTTATTAACGTGAG-AATTCTGTCTCTCTTGGTTCTGGGACGAACTT
* * *
1708 CTGAACTTGTCAGACTTTTACGAGTTCTTTTTTAAA-TCCAGATCCTTAAAATGTTCAAGACAAT
453 CTGAACTTGTCAAACTTTTACGA-TT-TCTTTTAAACTCCAGATCCTTAAAATATTCAAGACAAT
* * * * *
1772 CCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAG
516 CCAATCCTTCGAGCAATTTTCCGAACATTACATGCGAGGGAAATCGCATCATTTGATCT-AATAA
*
1837 TTTT-TCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTC
580 TTTTGTCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTC
* *
1901 TCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTT-TATAAATTCTG
645 TCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCT-TAAATCCGG
* * * *** ** * *
1965 TTCCTTAAAATATTCAAGCCGATATATTCCTTT-GAGCAATTTTTTGAACATTACATGCTTGGGG
709 TTCCTTAAAATATTCAAGACGATACATT-CTTTCGAGCAACTTTCCAAACATTACATGCAAGAGA
* * * * *
2029 AGTTGCATCATTTGATCTAACAATTTTTTCATTTTGTAAATAAGTTTTG
773 AATCGCATCATTTGATCTAACAAGTTTTTAATTTTGTAAACAAGTTTTG
2078 GCCTTAGAAT
Statistics
Matches: 701, Mismatches: 110, Indels: 20
0.84 0.13 0.02
Matches are distributed among these distances:
822 8 0.01
823 526 0.75
824 19 0.03
825 148 0.21
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (824 bp):
TTGGTTCTTGGACGAACTTCCAAACCTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTACCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACACGCTCAGGAAGTCGC
ATCATTTAGTCTAAAAAGTTTGTCATTATGTAAAACAAGTCTTGGCCTTTGAAATAAAAACTTAT
TTACACGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCAAACTTGTAAAACTTTTACGAG
TTCTTTTATAAATCCGATTCCTTAAAGTATTCAAAACGATACAATCCTTCAATCAATTTTTCGAA
CATTACATGCGAGGGAAAACACACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTTTG
ACCTTTCAATTAAAAACTTATTAACGTGAGAATTCTGTCTCTCTTGGTTCTGGGACGAACTTCTG
AACTTGTCAAACTTTTACGATTTCTTTTAAACTCCAGATCCTTAAAATATTCAAGACAATCCAAT
CCTTCGAGCAATTTTCCGAACATTACATGCGAGGGAAATCGCATCATTTGATCTAATAATTTTGT
CATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTCTCTT
GGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTAAATCCGGTTCCTTA
AAATATTCAAGACGATACATTCTTTCGAGCAACTTTCCAAACATTACATGCAAGAGAAATCGCAT
CATTTGATCTAACAAGTTTTTAATTTTGTAAACAAGTTTTGATT
Found at i:2076 original size:432 final size:431
Alignment explanation
Indices: 1258--2279 Score: 1413
Period size: 432 Copynumber: 2.4 Consensus size: 431
1248 TGTTTTGATT
* * * ** ** * *
1258 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAGCTTCGGTACCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGAT-CCT
* * * * * *
1323 TAAAGTATTCAAGACGATCCAATCCTT-GAAGCAATTTTTCGAACATTACATGCTCA-GGAAGTC
65 TAAAGTGTTCAAGACGATCCATTCCTTCG-AGTAATTTTCCGAACATTACATGC-GAGGGAAATC
* * * * *
1386 GCATCATTTGGTCTAAAAAGTTTGTCA-TATGAAAACTAGTTTTGGCCTTTGAAATAAAAACTTA
128 GCATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAAATAAAAACTTA
* *
1450 TTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
193 TTTACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGA
* *
1515 GTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGACGATATAATCCTTCAATCAATTTTCTGA
258 GTTCTTTTATAAATCCGGTTCCTTAAAATATTCAAGACGATATAATCCTTCAAGCAATTTTCTGA
*
1580 ACATTACATGCTTGGGAAGTCGCACCATTTGGTCTAAAAAGTTTGACATTTTGTAAACAAGTTTT
323 ACATTACATGCTTGGGAAGTCGCACCATTTGATCTAAAAAGTTTGACATTTTGTAAACAAGTTTT
* *
1645 GGTCTTTGAATTAAAAACTTATTTACGT-AGAAATTGTTTCTCTC
388 GGCCTTAGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTC
* * *
1689 TTGGTTGTGGGACGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTTTAAATCCAGATCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCC-GATCCT
* * *
1754 TAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGAGGGAAATCGC
65 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTACATGCGAGGGAAATCGC
*
1819 ATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
130 ATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAAATAAAAACTTATT
*
1884 TACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGT
195 TACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGT
* * * * ** *
1949 TCTTTTATAAATTCTGTTCCTTAAAATATTCAAGCCGATATATTCCTTTGAGCAATTTTTTGAAC
260 TCTTTTATAAATCCGGTTCCTTAAAATATTCAAGACGATATAATCCTTCAAGCAATTTTCTGAAC
* * * * * ** *
2014 ATTACATGCTTGGGGAGTTGCATCATTTGATCTAACAATTTTTTCATTTTGTAAATAAGTTTTGG
325 ATTACATGCTTGGGAAGTCGCACCATTTGATCTAAAAAGTTTGACATTTTGTAAACAAGTTTTGG
*
2079 CCTTAGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC
390 CCTTAGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
2121 TTTGTTGTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCC-GATCCT
* ** * **
2186 TAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTTCATGCGAGAAAAATCGC
65 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTACATGCGAGGGAAATCGC
2251 ATCATTTGGTCTAAATAGTTTTTCATTTT
130 ATCATTTGGTCTAAATAGTTTTTCATTTT
2280 GTAAACATAT
Statistics
Matches: 519, Mismatches: 67, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
430 1 0.00
431 125 0.24
432 391 0.75
433 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (431 bp):
TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGATCCTT
AAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTACATGCGAGGGAAATCGCA
TCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAAATAAAAACTTATTT
ACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTT
CTTTTATAAATCCGGTTCCTTAAAATATTCAAGACGATATAATCCTTCAAGCAATTTTCTGAACA
TTACATGCTTGGGAAGTCGCACCATTTGATCTAAAAAGTTTGACATTTTGTAAACAAGTTTTGGC
CTTAGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
Found at i:2834 original size:594 final size:600
Alignment explanation
Indices: 1700--2890 Score: 1618
Period size: 594 Copynumber: 2.0 Consensus size: 600
1690 TGGTTGTGGG
* ** *
1700 ACGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTTTAAATCCAGATCCTTAAAATGTTCA
1 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCAGATCCTTAAAATATTCA
* * * *
1765 AGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTC
66 AGACAATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCGAGGGAAATCGCATCATTTGGTC
* * ** * *
1830 TAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGACAAT
131 TAAAAAGTTTGTCATGATAAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGCGACAAT
1895 TGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAA
196 TGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAA
* * **
1960 TTCTGTTCCTTAAAATATTCAAGCCGATATATTCCTTTGAGCAATTTTTTGAACATTACATGCTT
261 TTCTGTTCCTTAAAATATTCAAGACGATACATTCCTGCGAGCAATTTTTTGAACATTACA--C--
* * * *
2025 GGGGAGTTGCATCATTTGATCTAACAATTTTTTCATTTTGTAAATAAGTTTTGGCCTTAGAATTA
322 ---GAG-TGCATCATTTGATCTAACAATGTTTTCATTTTGTAAACAAGTTTTGACCTTACAATTA
* * **
2090 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTGTTGGATGAACTTCCGAACTTGTCAAAC
383 AAAACTTATTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAAC
* * * *
2155 TTTTACGAGTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAA
448 TGTTACCAGTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAA
*
2220 TTTTCAAAACATTTCATGCGAGAAAAATCGCATCATTTG-GTCTAAATAGTTTTTCATTTTGTAA
513 TTTTCAAAACATTCCATGCGAGAAAAATCGCATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAA
2284 ACATA-TTTTGATCTTGGTTCTCGA
577 ACA-AGTTTTGATCTTGGTTCTCGA
* * * * * *
2308 ACGAACTTTTGAACTTTTCAAACTTTTACGAGTTCTTTTACAAATTCGGTTCCTTAAAGTATTCA
1 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCAGATCCTTAAAATATTCA
* * * * *
2373 AGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCGCA-GGAAGTTGCATTATTTGGT
66 AGACAATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCG-AGGGAAATCGCATCATTTGGT
* * *
2437 CTAAAAAGTTTGTCA-GATGAAAACTAGTTTTCGCCTTTGAATTAAAAACTTATTTATGCGACAA
130 CTAAAAAGTTTGTCATGATAAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGCGACAA
* * *
2501 TTGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTC-TTTATTA
195 TTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTA-TA
* * * *
2565 AA-TCTGGTTCCTTAAATTGTTCAAGACGATCCATTCCTGCGAGTAATTTTTTGAACATT-C-C-
259 AATTCT-GTTCCTTAAAATATTCAAGACGATACATTCCTGCGAGCAATTTTTTGAACATTACACG
* *
2626 A-TGCATCATTTGGTCT-A-AATAGTTTTCATTTTGTAAACAAGTTTTGATC-TATCAATTAAAA
323 AGTGCATCATTTGATCTAACAAT-GTTTTCATTTTGTAAACAAGTTTTGACCTTA-CAATTAAAA
2687 ACTTATTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGT
386 ACTTATTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGT
* *
2752 TACCAGTTCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTT
451 TACCAGTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAA-TT
* *
2817 TTC-GAACATTCCATGCGAGAGAAATCGCATCATTGAGTCTAAATAGTTTTTCATTTTGTAAACA
515 TTCAAAACATTCCATGCGAGAAAAATCGCATCATTGAGTCTAAATAGTTTTTCATTTTGTAAACA
2881 AGTTTTGATC
580 AGTTTTGATC
2891 ATTAAAGTAA
Statistics
Matches: 517, Mismatches: 58, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
593 9 0.02
594 212 0.41
595 19 0.04
597 1 0.00
603 1 0.00
606 8 0.02
607 145 0.28
608 121 0.23
609 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (600 bp):
ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCAGATCCTTAAAATATTCA
AGACAATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCGAGGGAAATCGCATCATTTGGTC
TAAAAAGTTTGTCATGATAAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGCGACAAT
TGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAAA
TTCTGTTCCTTAAAATATTCAAGACGATACATTCCTGCGAGCAATTTTTTGAACATTACACGAGT
GCATCATTTGATCTAACAATGTTTTCATTTTGTAAACAAGTTTTGACCTTACAATTAAAAACTTA
TTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTTACCA
GTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTTTCAAA
ACATTCCATGCGAGAAAAATCGCATCATTGAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
GATCTTGGTTCTCGA
Found at i:2870 original size:810 final size:816
Alignment explanation
Indices: 1484--3096 Score: 2140
Period size: 810 Copynumber: 2.0 Consensus size: 816
1474 TGGTTGTTGG
*
1484 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCTTAAAGTATTCA
1 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCGGTTCCTTAAAGTATTCA
* * ***
1549 AGACGATATAATCCTTCAATCAATTTTCTGAACATTACATGCTTGGGAAGTCGCACCATTTGGTC
66 AGACGATACAATCCTTCAAGCAATTTTCTGAACATTACATGCGCAGGAAGTCGCACCATTTGGTC
** * * *
1614 TAAAAAGTTTGACATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTAGAAAT
131 TAAAAAGTTTGACATGATGAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGTAGAAAT
* *
1679 TGTTTCTCTCTTGGTTGTGGGACGAACTTCTGAACTTGTCAGACTTTTACGAGTTCTTTTTTAAA
196 TGTTTCTCTCTTGGTTGTGGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTATTAAA
*
1744 TCCAGATCCTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGA
261 TCCAGATCCTTAAAATGTTCAAGACAATCCATTCCTGCGAGTAATTTTCCGAACATTCCA--C--
* * *
1809 GGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGGCCTTTGAATTA
322 --G--ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGACCTATCAATTA
* *
1874 AAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAA
383 AAAACTTATTTACGTGACAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAAA
* * * * * *
1939 TTTTACGAGTTCTTTTATAAATTCTGTTCCTTAAAATATTCAAGCCGATATATTCCTTTGAGCAA
448 TGTTACCAGTTCTTTTATAAATTCTGTTCCTTAAAATATTCAAGACGATACATTCCTTCGAGAAA
* ** * * * * *
2004 TTTTTTGAACATTACATGCTTGGGGAGTTGCATCATTTGATCTAACAATTTTTTCATTTTGTAAA
513 TTTTTCGAACATTACATGCGAGAGAAATCGCATCATTTGATCTAACAAGTTTTTCATTTTGTAAA
* * * * * * * *
2069 TAAGTTTTG-GCCTTAGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTGTTGGA
578 CAAGTTTTGAGCATTA-AAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGA
*
2133 TGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTTCCTTAAAGTGTTC
642 TGAACTTCCGAACCTT-TCAAACTTTTACGAGTTCTTT-TATAAATCCGGTTCCTTAAAGTATTC
* * * * *
2196 TAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTTCATGCGAGAAAAATCGCATCATTTGGT
705 AAGACGATCCAATCCTTCGAGTAATTTTCAAAACATTACACGCGAGAAAAATCGCATCATTTAGT
2261 CTAAATAGTTTTTCATTTTGTAAACATATTTTGATCTTGGTTCTCGA
770 CTAAATAGTTTTTCATTTTGTAAACATATTTTGATCTTGGTTCTCGA
** * *
2308 ACGAACTTTTGAACTTTTCAAACTTTTACGAGTTCTTTTACAAATTCGGTTCCTTAAAGTATTCA
1 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCGGTTCCTTAAAGTATTCA
* * **
2373 AGACGATCCAATCCTTCAAGCAATTTT-TCGAACATTACATGCGCAGGAAGTTGCATTATTTGGT
66 AGACGATACAATCCTTCAAGCAATTTTCT-GAACATTACATGCGCAGGAAGTCGCACCATTTGGT
* * * *
2437 CTAAAAAGTTTGTCA-GATGAAAACTAGTTTTCGCCTTTGAATTAAAAACTTATTTATG-CGACA
130 CTAAAAAGTTTGACATGATGAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGTAGA-A
* *
2500 ATTGTTTCTCTCTTGGTTGTTGGATGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTATT
194 ATTGTTTCTCTCTTGGTTGTGGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTATT
** * * * **
2564 AAATCTGGTTCCTTAAATTGTTCAAGACGATCCATTCCTGCGAGTAATTTTTTGAACATT-C-C-
258 AAATCCAGATCCTTAAAATGTTCAAGACAATCCATTCCTGCGAGTAATTTTCCGAACATTCCACG
** *
2626 AT-GCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAAC
323 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGACCTATCAATTAAAAAC
* * *
2689 TTATTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTTA
388 TTATTTACGTGACAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAAATGTTA
* * * *
2754 CCAGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTTT
453 CCAGTTCTTTTATAAATTCT-GTTCCTTAAAATATTCAAGACGATACATTCCTTCGAGAAATTTT
*
2818 TCGAACATTCCATGCGAGAGAAATCGCATCA-TTGAGTCTAA-ATAGTTTTTCATTTTGTAAACA
517 TCGAACATTACATGCGAGAGAAATCGCATCATTTGA-TCTAACA-AGTTTTTCATTTTGTAAACA
*
2881 AGTTTTGATCATTAAAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGATGA
580 AGTTTTGAGCATTAAAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGATGA
* * * *
2946 ACTTCCGAACCTTTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT
645 ACTTCCGAACCTTTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGAC
*** ** ** *
3011 GATCCAATCCTTCGAGTAATTTTTTGAACATTACACGCTCGGGAAGTCGCATCATTTAGTCTAAA
710 GATCCAATCCTTCGAGTAATTTTCAAAACATTACACGCGAGAAAAATCGCATCATTTAGTCTAAA
3076 TAGTTTTTCATTTTGTAAACA
775 TAGTTTTTCATTTTGTAAACA
3097 AGTCTTGGCC
Statistics
Matches: 688, Mismatches: 92, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
809 9 0.01
810 370 0.54
811 27 0.04
812 2 0.00
819 1 0.00
822 4 0.01
823 148 0.22
824 127 0.18
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (816 bp):
ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTACAAATCCGGTTCCTTAAAGTATTCA
AGACGATACAATCCTTCAAGCAATTTTCTGAACATTACATGCGCAGGAAGTCGCACCATTTGGTC
TAAAAAGTTTGACATGATGAAAACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACGTAGAAAT
TGTTTCTCTCTTGGTTGTGGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTATTAAA
TCCAGATCCTTAAAATGTTCAAGACAATCCATTCCTGCGAGTAATTTTCCGAACATTCCACGATC
GCATCATTTGGTCTAAATAGTTTTTCATTTTAAAAACAAGTTTTGACCTATCAATTAAAAACTTA
TTTACGTGACAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAAATGTTACCA
GTTCTTTTATAAATTCTGTTCCTTAAAATATTCAAGACGATACATTCCTTCGAGAAATTTTTCGA
ACATTACATGCGAGAGAAATCGCATCATTTGATCTAACAAGTTTTTCATTTTGTAAACAAGTTTT
GAGCATTAAAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGATGAACTTCC
GAACCTTTCAAACTTTTACGAGTTCTTTTATAAATCCGGTTCCTTAAAGTATTCAAGACGATCCA
ATCCTTCGAGTAATTTTCAAAACATTACACGCGAGAAAAATCGCATCATTTAGTCTAAATAGTTT
TTCATTTTGTAAACATATTTTGATCTTGGTTCTCGA
Found at i:3001 original size:216 final size:216
Alignment explanation
Indices: 2628--3479 Score: 1043
Period size: 216 Copynumber: 4.0 Consensus size: 216
2618 AACATTCCAT
* *
2628 GCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
* * * * * * *
2692 TTTATGTGAGAATTGTTTCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTGTTACCA
66 TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * * *
2757 GTTCTTTTTTAA-ATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGAAATTTTTCG
131 GTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCG
* *
2821 AACATTCCATGCGAGAGAAATC
195 AACATTACATGCGAGGGAAATC
* * * *
2843 GCATCA-TTGAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCATTAAAGTAAAAACTT
1 GCATCATTTG-GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTT
* * *
2907 ATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGATGAACTTCCGAACCTT-TCGAACTTTTAC
65 ATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTAC
* *
2971 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTT
129 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC
* ** *
3036 GAACATTACACGCTCGGGAAGTC
194 GAACATTACATGCGAGGGAAATC
* * * *
3059 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
* * * * * * ** *
3124 TTTACATGAGAATTGT-TCTCTCTCGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACGA
66 TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * ** * * * * *
3188 GTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGATTAATTTTTCGA
131 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGA
* *
3253 ACATTCCATGCGAGGGAAAAC
196 ACATTACATGCGAGGGAAATC
* *
3274 ACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTG
1 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
* * **
3339 TTAACGTGAGAATTCTGTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGA
66 TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* * * *
3404 TTTCTTTTA-AAGCTTTGGTTCCTTAAAGTATTCAAGCCGATCCAATCCTTCGAGCAA-TTTTCT
131 GTTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-
3467 GAACATTACATGC
194 GAACATTACATGC
3480 TTGG
Statistics
Matches: 537, Mismatches: 91, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
214 6 0.01
215 201 0.37
216 323 0.60
217 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTA
TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGA
ACATTACATGCGAGGGAAATC
Found at i:3281 original size:431 final size:422
Alignment explanation
Indices: 2327--3476 Score: 1390
Period size: 431 Copynumber: 2.7 Consensus size: 422
2317 TGAACTTTTC
** * * * *
2327 AAACTTTTACGAGTTCTTTTACAAATTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCAA
1 AAACTTTTACGAGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * * * * * * **
2392 GCAATTTTTCGAACATTACATGCGCA-GGAAGTTGCATTATTTGGTCTAAAAAGTTTGTCA-GAT
66 GAAATTTTTCGAACATTCCATGCG-AGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * * * * * * *
2455 GAAAACTAGTTTTCG-CCTTTGAATTAAAAACTTATTTATGCGACAATTGTTTCTCTCTTGGTTG
130 GTAAACAAGTTTT-GACCTTTAAATTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTC
* *
2519 TTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTC-TTTATTAA-ATCTGGTTCCTTAAAT
194 TTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTC-GGTTCCTTAAAG
* * * *
2582 TGTTCAAGACGATCCATTCCTGCGAGTAATTTTTTGAACATT---CCATGCATCATTTGGTCTAA
257 TATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACACCATGCATCATTTAGTCTAA
* * **
2644 ATAGTTTTCATTTTGTAAACAAGTTTTGATCTATCAATTAAAAACTTATTTATGTGAGAATTGTT
322 ATAGTTTTCATTTTGTAAACAAGTCTTGACCTATCAATTAAAAACTTATTTACATGAGAATTGTT
* * * *
2709 TCTCGCTTGGTTGTTGGACAAACTTCCGAACTTGTC
387 TCTCGCTCGGTTGTCGGACAAACTTCCAAACTTGTA
* *
2745 AAACTGTTACCAGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
1 AAACTTTTACGAGTTCTTTTTTAAATTCT-GTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
*
2809 AGAAATTTTTCGAACATTCCATGCGAGAGAAATCGCATCA-TTGAGTCTAAATAGTTTTTCATTT
65 AGAAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTG-GTCTAAATAGTTTTTCATTT
* * *
2873 TGTAAACAAGTTTTGATCATTAAAGTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTC
129 TGTAAACAAGTTTTGACCTTTAAATTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTC
* *
2938 TTGGATGAACTTCCGAACCTT-TCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
194 TTGGATGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
*
3002 ATTCAAGATGATCCAATCCTTCGAGTAATTTTTTGAACATTACACGCTCGGGAAGTCGCATCATT
258 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACA--C-C----A-T-GCATCATT
* * *
3067 TAGTCTAAATAGTTTTTCATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATG
314 TAGTCTAAATAG-TTTTCATTTTGTAAACAAGTCTTGACCTATCAATTAAAAACTTATTTACATG
* ** * *
3132 AGAATTG-TTCTCTCTCGGTTGTCGGAGGAGCTTCTAAACTTGTA
378 AGAATTGTTTCTCGCTCGGTTGTCGGACAAACTTCCAAACTTGTA
* * *
3176 AAACTTTTACGAGTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
** * *
3241 TTAATTTTTCGAACATTCCATGCGAGGGAAAACACATCATTTGGTCTAAATAGTTTTTCATTTTG
66 GAAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * *
3306 TAAACAAGTTTTGACCTTTCAATTAAAAACTTGTTAACGTGAGAATTCTGTCTCTCTTGGTTCTT
131 TAAACAAGTTTTGACCTTTAAATTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTT
* * * *
3371 GGACGAACTTTTGAACTTGTCAAACTTTTACGATTTCTTTTA-AAGCTTTGGTTCCTTAAAGTAT
196 GGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-CTTCGGTTCCTTAAAGTAT
* * *
3435 TCAAGCCGATCCAATCCTTCGAGCAATTTTCTGAACATTACA
260 TCAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACA
3477 TGCTTGG
Statistics
Matches: 625, Mismatches: 82, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
417 6 0.01
418 101 0.16
419 136 0.22
420 9 0.01
424 1 0.00
425 1 0.00
429 1 0.00
430 6 0.01
431 306 0.49
432 58 0.09
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (422 bp):
AAACTTTTACGAGTTCTTTTTTAAATTCTGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
GAAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
TAAACAAGTTTTGACCTTTAAATTAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTT
GGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
CAAGACGATCCAATCCTTCGAGTAATTTTTTGAACATTACACCATGCATCATTTAGTCTAAATAG
TTTTCATTTTGTAAACAAGTCTTGACCTATCAATTAAAAACTTATTTACATGAGAATTGTTTCTC
GCTCGGTTGTCGGACAAACTTCCAAACTTGTA
Done.