Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007001.1 Kokia drynarioides strain JFW-HI SEQ_121607, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3562
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:938 original size:56 final size:56

Alignment explanation


    Indices: 852--964  Score: 208
    Period size: 56  Copynumber: 2.0  Consensus size: 56

        842 AAATTTAAGC

                 *                                                  
        852 AACAACACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT
          1 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT

                                                         *          
        908 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTCTATCTACTAT
          1 AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT

             
        964 A
          1 A

        965 CTTGCATCGA


Statistics
Matches: 55,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  56   55  1.00

ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28


Consensus pattern (56 bp):   
AACAAAACACCATCCTCGTGGGATCGATATCCGATAGATTCATCTATATCTACTAT
Done.