Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007004.1 Kokia drynarioides strain JFW-HI SEQ_121610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10155
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:1897 original size:14 final size:14

Alignment explanation


    Indices: 1878--1905  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       1868 ATACTTGTCT

                          
       1878 ACACTTTGCGTTAC
          1 ACACTTTGCGTTAC

                          
       1892 ACACTTTGCGTTAC
          1 ACACTTTGCGTTAC

       1906 GTTGTATTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36


Consensus pattern (14 bp):   
ACACTTTGCGTTAC

Found at i:8270 original size:14 final size:14

Alignment explanation


    Indices: 8251--8278  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       8241 AAAATACAAC

                          
       8251 GTAACGCAAAGTGT
          1 GTAACGCAAAGTGT

                          
       8265 GTAACGCAAAGTGT
          1 GTAACGCAAAGTGT

       8279 AGACAAGTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21


Consensus pattern (14 bp):   
GTAACGCAAAGTGT
Done.