Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007009.1 Kokia drynarioides strain JFW-HI SEQ_121615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3781
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35


Found at i:81 original size:19 final size:19

Alignment explanation


    Indices: 57--95  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         47 TTTAAAATTA

                               
         57 ATTTTTCAAAAATATTTTT
          1 ATTTTTCAAAAATATTTTT

                   *   *       
         76 ATTTTTCCAAATTATTTTT
          1 ATTTTTCAAAAATATTTTT

             
         95 A
          1 A

         96 ATCAATTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59


Consensus pattern (19 bp):   
ATTTTTCAAAAATATTTTT

Found at i:3099 original size:26 final size:26

Alignment explanation


    Indices: 3069--3123  Score: 110
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       3059 AATGTTTCAT

                                      
       3069 TGTCACCTAGGAAAGCATATTTCAAG
          1 TGTCACCTAGGAAAGCATATTTCAAG

                                      
       3095 TGTCACCTAGGAAAGCATATTTCAAG
          1 TGTCACCTAGGAAAGCATATTTCAAG

               
       3121 TGT
          1 TGT

       3124 GTTGGTAATG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   29  1.00

ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Consensus pattern (26 bp):   
TGTCACCTAGGAAAGCATATTTCAAG
Done.