Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007010.1 Kokia drynarioides strain JFW-HI SEQ_121616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12200
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:5774 original size:22 final size:22

Alignment explanation


    Indices: 5730--5775  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       5720 CTTAGCTTTT

                   *         **   
       5730 TTTTTTTTTTTAATAATCCAAA
          1 TTTTTTTATTTAATAATAAAAA

                          *       
       5752 TTTTTTTATTTAATTATAAAAA
          1 TTTTTTTATTTAATAATAAAAA

              
       5774 TT
          1 TT

       5776 ATAAAATTGA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61


Consensus pattern (22 bp):   
TTTTTTTATTTAATAATAAAAA
Done.