Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000702.1 Kokia drynarioides strain JFW-HI SEQ_111704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2905
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:44 original size:25 final size:23

Alignment explanation


    Indices: 1--46  Score: 65
    Period size: 25  Copynumber: 1.9  Consensus size: 23

                                   
          1 AATTATTGTTTAGATTTAATTCA
          1 AATTATTGTTTAGATTTAATTCA

                    *              
         24 AATTATCTTTTTAGAATTTAATT
          1 AATTAT-TGTTTAG-ATTTAATT

         47 TTGATCCAAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    6  0.30
  25    8  0.40

ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54


Consensus pattern (23 bp):   
AATTATTGTTTAGATTTAATTCA
Done.