Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007020.1 Kokia drynarioides strain JFW-HI SEQ_121626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2749
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28


Found at i:346 original size:85 final size:85

Alignment explanation


    Indices: 203--372  Score: 286
    Period size: 85  Copynumber: 2.0  Consensus size: 85

        193 TTGAATGTGC

                                       *                     *   *           
        203 AGCAAAAGAGAGATAATTTCAGAAAAATGTTGTATTTTCAAGTAAACTTGTATGTAGAAACAAAG
          1 AGCAAAAGAGAGATAATTTCAGAAAAAAGTTGTATTTTCAAGTAAACTTATATATAGAAACAAAG

             *                  
        268 AGAAGCATCCAACCACACCT
         66 ACAAGCATCCAACCACACCT

                                                        *                    
        288 AGCAAAAGAGAGATAATTTCAGAAAAAAGTTGTATTTTCAAGTAGACTTATATATAGAAACAAAG
          1 AGCAAAAGAGAGATAATTTCAGAAAAAAGTTGTATTTTCAAGTAAACTTATATATAGAAACAAAG

                         *      
        353 ACAAGCATCCAACGACACCT
         66 ACAAGCATCCAACCACACCT

        373 TTTTTTATTT


Statistics
Matches: 79,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  85   79  1.00

ACGTcount: A:0.46, C:0.15, G:0.16, T:0.23


Consensus pattern (85 bp):   
AGCAAAAGAGAGATAATTTCAGAAAAAAGTTGTATTTTCAAGTAAACTTATATATAGAAACAAAG
ACAAGCATCCAACCACACCT
Done.