Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000703.1 Kokia drynarioides strain JFW-HI SEQ_111705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34


Found at i:249 original size:25 final size:25

Alignment explanation


    Indices: 196--242  Score: 71
    Period size: 23  Copynumber: 2.0  Consensus size: 25

        186 GTTGGATCAA

                                     
        196 AATTAAATTCTAAAAAGATAATTTG
          1 AATTAAATTCTAAAAAGATAATTTG

                          *         
        221 AATTAAA-TCTAAACA-ATAATTT
          1 AATTAAATTCTAAAAAGATAATTT

        243 CTTAATTGGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23    7  0.33
  24    7  0.33
  25    7  0.33

ACGTcount: A:0.53, C:0.06, G:0.04, T:0.36


Consensus pattern (25 bp):   
AATTAAATTCTAAAAAGATAATTTG
Done.