Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007032.1 Kokia drynarioides strain JFW-HI SEQ_121640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5691
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Found at i:2201 original size:19 final size:19

Alignment explanation


    Indices: 2177--2220  Score: 54
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       2167 ATAGCATATG

                           *    
       2177 TCACAACATCT-CATGTTTT
          1 TCACAACAT-TACATATTTT

                  *            
       2196 TCACAATATTACATATTTT
          1 TCACAACATTACATATTTT

                  
       2215 TCACAA
          1 TCACAA

       2221 TCATATTAAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  18    1  0.05
  19   21  0.95

ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41


Consensus pattern (19 bp):   
TCACAACATTACATATTTT
Done.