Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007037.1 Kokia drynarioides strain JFW-HI SEQ_121645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2287
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:845 original size:27 final size:27

Alignment explanation


    Indices: 796--854  Score: 70
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        786 CTTTAGCCAT

                                        
        796 TTTTTAATTTTTGTTTTACTA-TTTACA
          1 TTTTTAATTTTTGTTTTACTATTTTA-A

                                         
        823 TTTTTAATTTAATT-TTTTA-TATTTTAA
          1 TTTTTAATTT--TTGTTTTACTATTTTAA

                 
        850 TTTTT
          1 TTTTT

        855 TTCTCTTTTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 6
        0.83            0.00        0.17

Matches are distributed among these distances:
  27   18  0.62
  28    9  0.31
  29    2  0.07

ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71


Consensus pattern (27 bp):   
TTTTTAATTTTTGTTTTACTATTTTAA
Done.