Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007039.1 Kokia drynarioides strain JFW-HI SEQ_121647, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19028
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35


Found at i:1695 original size:7 final size:7

Alignment explanation


    Indices: 1683--1709  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       1673 CCACTGTTTA

                   
       1683 ATTCATC
          1 ATTCATC

                   
       1690 ATTCATC
          1 ATTCATC

                   
       1697 ATTCATC
          1 ATTCATC

                  
       1704 ATTCAT
          1 ATTCAT

       1710 AATAACATAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44


Consensus pattern (7 bp):   
ATTCATC

Found at i:7940 original size:5 final size:6

Alignment explanation


    Indices: 7922--7947  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       7912 GCAGTATATA

                                          
       7922 TTCTTT TTCTTT TTCTTT TTCTTT TT
          1 TTCTTT TTCTTT TTCTTT TTCTTT TT

       7948 TACGATGTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85


Consensus pattern (6 bp):   
TTCTTT
Done.