Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007045.1 Kokia drynarioides strain JFW-HI SEQ_121653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7307
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:2481 original size:51 final size:51

Alignment explanation


    Indices: 2405--2642  Score: 273
    Period size: 51  Copynumber: 4.6  Consensus size: 51

       2395 CTGTAAACGA

                            *              *                   
       2405 AAAGGTCCGATAACTAGGTGTCATCGTGAGTTAATGAATCCTTTACGGATT
          1 AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                   *   *               *                  *    
       2456 AAAGGTCTGATGACTAAGTGTCATCGTAAGTAAATGAATCCTTTACAGATT
          1 AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

                   *   *                       *               
       2507 AAAGGTCTGATTACTAAGTGTCATCGTGAGTAAATAAATCC-TTACGGATT
          1 AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

             **                              *          *    * **
       2557 GTGAGGTCCGATAACTAAGTGTCATCGTGAGTACATGAATTCCTATACGAAAC
          1 -AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATT

                        *                     
       2610 AAGAGGTCCGATGACTATA-TGTCATCGTGAGTA
          1 AA-AGGTCCGATAACTA-AGTGTCATCGTGAGTA

       2643 TTAAATGAAA


Statistics
Matches: 159,  Mismatches: 23, Indels: 8
        0.84            0.12        0.04

Matches are distributed among these distances:
  50    8  0.05
  51  115  0.72
  52    3  0.02
  53   32  0.20
  54    1  0.01

ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Consensus pattern (51 bp):   
AAAGGTCCGATAACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT

Done.