Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007056.1 Kokia drynarioides strain JFW-HI SEQ_121664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2105
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Found at i:1607 original size:19 final size:19

Alignment explanation


    Indices: 1583--1624  Score: 84
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1573 CGGACGGAAC

                               
       1583 GGATACCTGAACATGAAAT
          1 GGATACCTGAACATGAAAT

                               
       1602 GGATACCTGAACATGAAAT
          1 GGATACCTGAACATGAAAT

                
       1621 GGAT
          1 GGAT

       1625 CACGGTTTCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   23  1.00

ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21


Consensus pattern (19 bp):   
GGATACCTGAACATGAAAT
Done.