Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007059.1 Kokia drynarioides strain JFW-HI SEQ_121667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2305
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Found at i:1148 original size:31 final size:31

Alignment explanation


    Indices: 1112--1191  Score: 85
    Period size: 31  Copynumber: 2.6  Consensus size: 31

       1102 TTTTTGATTA

                               *            
       1112 AATTTGGTATTCAAACTTGTCACTTT-TTTCT
          1 AATTTGGTATTCAAACTTGACACTTTATTT-T

                      *                     
       1143 AATTTGGTA-CCTAAACTTGACACTTTATTTT
          1 AATTTGGTATTC-AAACTTGACACTTTATTTT

              *                
       1174 AAGTTGGTACTT-AAACTT
          1 AATTTGGTA-TTCAAACTT

       1192 TTTGGGGTTC


Statistics
Matches: 41,  Mismatches: 4, Indels: 8
        0.77            0.08        0.15

Matches are distributed among these distances:
  30    1  0.02
  31   37  0.90
  32    3  0.07

ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46


Consensus pattern (31 bp):   
AATTTGGTATTCAAACTTGACACTTTATTTT
Done.