Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000706.1 Kokia drynarioides strain JFW-HI SEQ_111709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8364
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:3870 original size:12 final size:11

Alignment explanation


    Indices: 3832--3895  Score: 51
    Period size: 13  Copynumber: 5.5  Consensus size: 11

       3822 AATTTTAAAA

                        
       3832 TTTTTATAACTT
          1 TTTTTATAA-TT

                         
       3844 TCTTTTATAAATT
          1 T-TTTTAT-AATT

                        
       3857 TTATTTATAA--
          1 TT-TTTATAATT

                        
       3867 TTTTTATGAATT
          1 TTTTTAT-AATT

               **      
       3879 TTTAAATAATT
          1 TTTTTATAATT

                  
       3890 TTTTTA
          1 TTTTTA

       3896 ATTTTAAAAG


Statistics
Matches: 42,  Mismatches: 4, Indels: 13
        0.71            0.07        0.22

Matches are distributed among these distances:
   9    5  0.12
  10    4  0.10
  11    8  0.19
  12    9  0.21
  13   14  0.33
  14    2  0.05

ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64


Consensus pattern (11 bp):   
TTTTTATAATT
Done.