genome.fa.s7063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007063.1 Kokia drynarioides strain JFW-HI SEQ_121672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192682

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10921--10980	21	2.8	21	87	7	77	33	21	13	31	1.92
13154--13388	42	5.5	42	81	6	208	25	26	11	36	1.89
15999--17568	788	2.0	788	90	0	2471	33	23	12	30	1.92
22317--22364	12	3.8	12	79	15	51	4	29	0	66	1.10
24208--24240	14	2.4	14	85	14	50	75	0	12	12	1.04
33615--33672	29	2.0	29	86	0	80	27	17	13	41	1.87
33801--33885	42	2.2	37	74	20	91	21	27	8	43	1.80
33811--33922	42	2.7	42	90	1	163	24	26	8	41	1.82
42952--43055	43	2.4	43	83	0	145	26	28	20	24	1.99
44455--44556	35	2.9	36	86	5	145	22	15	27	34	1.95
44522--44667	55	2.6	55	81	5	177	24	15	26	32	1.95
45270--45316	21	2.2	21	84	0	58	36	19	19	25	1.95
45982--46074	35	2.7	35	87	0	150	23	29	10	36	1.89
49885--49938	21	2.6	21	76	5	56	29	24	11	35	1.90
59564--59588	9	2.8	9	100	0	50	84	0	8	8	0.79
69021--69072	21	2.5	21	96	0	95	30	25	17	26	1.97
75338--75372	17	2.1	17	88	0	52	68	2	20	8	1.29
77257--77309	25	2.1	25	100	0	106	24	28	18	28	1.98
77520--77656	56	2.5	56	86	11	185	42	10	13	32	1.80
77529--77807	150	1.9	149	85	6	393	36	11	15	35	1.84
77680--77861	55	3.3	52	78	13	170	37	9	16	36	1.81
77679--77883	56	3.7	56	78	11	183	36	10	18	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77782--78044	137	1.9	136	83	3	319	37	12	14	35	1.84
77914--78034	56	2.2	56	92	0	197	41	14	15	28	1.87
77717--78124	193	2.1	193	81	6	456	37	12	13	35	1.83
81480--81557	39	2.0	39	92	0	129	43	1	8	46	1.43
82600--82643	21	2.1	21	86	0	61	70	13	4	11	1.31
82634--82705	12	6.3	12	75	15	64	69	26	1	2	1.10
82646--82705	22	2.8	21	72	25	61	70	26	0	3	1.03
82634--82705	23	3.2	21	78	11	72	69	26	1	2	1.10
82806--82834	13	2.1	14	93	6	51	34	6	0	58	1.25
98363--98420	25	2.3	25	90	0	89	31	3	27	37	1.73
99550--99653	36	2.9	36	86	1	145	37	14	26	21	1.92
102151--102354	36	5.7	36	81	5	164	27	15	25	31	1.95
102148--102353	72	2.9	70	77	8	202	29	14	25	31	1.95
103399--103451	26	2.0	26	92	0	88	64	5	5	24	1.38
103759--103913	51	3.1	50	90	2	238	50	6	12	30	1.64
107625--107668	21	2.2	19	84	8	52	31	9	2	56	1.43
116141--116182	21	2.0	21	100	0	84	38	9	4	47	1.57
116171--116264	21	4.1	22	70	21	68	29	12	1	56	1.44
116711--116774	17	3.6	18	84	14	87	37	4	1	56	1.30
117549--117598	22	2.3	22	85	0	64	54	2	4	40	1.31
117565--117608	22	2.0	22	86	0	61	59	2	2	36	1.23
118755--118955	29	6.8	29	75	8	165	37	25	2	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118756--118957	59	3.4	59	83	8	234	37	25	2	34	1.71
118864--119072	59	3.5	59	82	3	217	30	25	6	37	1.80
118761--119022	118	2.2	118	80	7	282	34	26	3	35	1.75
118820--119150	29	11.3	30	68	15	122	34	26	5	34	1.79
119088--119149	28	2.2	28	88	5	90	38	29	4	27	1.77
121323--121390	33	2.1	33	100	0	136	27	11	35	25	1.91
121506--121561	21	2.7	21	77	5	60	33	14	21	30	1.93
125451--125530	28	2.9	28	86	0	115	32	16	18	32	1.93
126337--126371	18	2.0	18	94	5	63	17	5	17	60	1.55
126953--126978	3	8.7	3	100	0	52	34	0	0	65	0.93
130194--130235	22	2.0	20	82	13	50	42	4	0	52	1.22
133546--133598	26	2.0	26	88	0	79	33	9	30	26	1.88
147814--148353	39	13.8	39	70	11	275	25	17	24	32	1.96
147813--148353	79	6.9	77	80	6	470	25	17	24	32	1.96
158406--158452	25	1.9	25	82	4	60	70	2	8	19	1.24
159328--159372	23	2.0	22	86	4	63	60	0	2	37	1.09
160191--160229	17	2.2	18	90	4	62	71	2	7	17	1.21
160692--160738	22	2.1	23	84	7	62	53	0	4	42	1.20
162498--163163	209	3.2	208	85	5	920	36	19	22	21	1.95
163457--163567	17	6.4	17	79	7	116	45	1	1	51	1.22
163457--163567	6	19.2	6	71	17	83	45	1	1	51	1.22
163475--163567	35	2.7	35	81	3	107	46	2	2	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164297--164323	3	9.0	3	100	0	54	66	0	0	33	0.92
165418--166031	29	20.9	28	71	15	190	37	26	1	34	1.67
165414--166049	59	10.8	59	80	9	381	37	26	1	33	1.68
165568--166097	176	3.0	172	80	8	570	37	26	2	33	1.69
165423--166093	30	22.9	29	72	15	313	36	26	2	34	1.69
167513--167559	16	2.9	16	81	6	51	31	4	6	57	1.43
179059--179101	21	2.0	21	91	8	70	53	6	11	27	1.63
180309--180348	21	2.0	21	85	9	57	32	15	7	45	1.74
180469--180516	20	2.5	20	80	10	55	47	0	4	47	1.21
180613--180653	19	2.3	19	83	8	59	39	0	2	58	1.11
187683--187747	24	2.7	24	75	0	67	26	9	20	44	1.81
187674--187784	48	2.3	48	78	6	125	27	10	15	45	1.79
189650--189714	32	2.0	32	85	5	87	41	3	1	53	1.25
189821--189868	18	2.7	18	83	3	62	39	8	4	47	1.53
191600--191666	17	3.9	17	80	9	82	41	1	2	53	1.25
191599--191673	6	13.0	6	72	13	68	42	1	2	53	1.23
191618--191692	35	2.2	33	83	11	89	45	4	2	48	1.35

Tables:   1

The End!