Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007064.1 Kokia drynarioides strain JFW-HI SEQ_121673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7101
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:1241 original size:7 final size:7

Alignment explanation


    Indices: 1229--1257  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

       1219 TTATGTACGA

                   
       1229 AGTGAAT
          1 AGTGAAT

                   
       1236 AGTGAAT
          1 AGTGAAT

                   
       1243 AGTGAAT
          1 AGTGAAT

                   
       1250 AGTGAAT
          1 AGTGAAT

             
       1257 A
          1 A

       1258 ATTGAAAGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28


Consensus pattern (7 bp):   
AGTGAAT

Done.