Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007070.1 Kokia drynarioides strain JFW-HI SEQ_121679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4352
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:2016 original size:18 final size:19

Alignment explanation


    Indices: 1995--2046  Score: 54
    Period size: 18  Copynumber: 2.7  Consensus size: 19

       1985 CAAAAATATA

                                
       1995 TAAAAATGTTTTTAAAA-T-
          1 TAAAAAT-TTTTTAAAATTG

                    *  *       
       2013 TAAAAATTATTCAAAATTG
          1 TAAAAATTTTTTAAAATTG

                           
       2032 TAAAAATATTTTTAA
          1 TAAAAAT-TTTTTAA

       2047 TATTTTTTAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 4
        0.77            0.11        0.11

Matches are distributed among these distances:
  17    7  0.26
  18    8  0.30
  19    7  0.26
  20    5  0.19

ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42


Consensus pattern (19 bp):   
TAAAAATTTTTTAAAATTG

Found at i:2036 original size:37 final size:37

Alignment explanation


    Indices: 1965--2046  Score: 96
    Period size: 37  Copynumber: 2.2  Consensus size: 37

       1955 TTTAATTAAT

                        *                        *
       1965 TTTTTAAAAATTTAAAAATTCAAAAATATATAAAAATG
          1 TTTTT-AAAATTAAAAAATTCAAAAATATATAAAAATA

                                          *        
       2003 TTTTTAAAATTAAAAATTATTC-AAAAT-TGTAAAAATA
          1 TTTTTAAAATTAAAAA--ATTCAAAAATATATAAAAATA

                   
       2040 TTTTTAA
          1 TTTTTAA

       2047 TATTTTTTAA


Statistics
Matches: 39,  Mismatches: 3, Indels: 5
        0.83            0.06        0.11

Matches are distributed among these distances:
  37   25  0.64
  38   10  0.26
  39    4  0.10

ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41


Consensus pattern (37 bp):   
TTTTTAAAATTAAAAAATTCAAAAATATATAAAAATA
Done.