Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007078.1 Kokia drynarioides strain JFW-HI SEQ_121687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2333
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34


Found at i:637 original size:7 final size:7

Alignment explanation


    Indices: 625--651  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        615 GTCACATGGC

                   
        625 TTGGGTA
          1 TTGGGTA

                   
        632 TTGGGTA
          1 TTGGGTA

                   
        639 TTGGGTA
          1 TTGGGTA

                  
        646 TTGGGT
          1 TTGGGT

        652 CGGTTTGGGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44


Consensus pattern (7 bp):   
TTGGGTA

Done.