Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007097.1 Kokia drynarioides strain JFW-HI SEQ_121706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4441
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34


Found at i:1486 original size:28 final size:28

Alignment explanation


    Indices: 1446--1504  Score: 118
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1436 ATTACACAAA

                                        
       1446 GAGTGGTCAGCCATGCAAGGGAGAAAAT
          1 GAGTGGTCAGCCATGCAAGGGAGAAAAT

                                        
       1474 GAGTGGTCAGCCATGCAAGGGAGAAAAT
          1 GAGTGGTCAGCCATGCAAGGGAGAAAAT

               
       1502 GAG
          1 GAG

       1505 GGGATCCTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   31  1.00

ACGTcount: A:0.36, C:0.14, G:0.37, T:0.14


Consensus pattern (28 bp):   
GAGTGGTCAGCCATGCAAGGGAGAAAAT
Done.