Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007098.1 Kokia drynarioides strain JFW-HI SEQ_121707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1590
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39


Found at i:114 original size:16 final size:15

Alignment explanation


    Indices: 93--132  Score: 53
    Period size: 16  Copynumber: 2.5  Consensus size: 15

         83 TCTTCCTTCC

                            
         93 TTCTTTTTGTTTTTCT
          1 TTCTTTTT-TTTTTCT

                            
        109 TTCTTTATTTTTTTCT
          1 TTCTTT-TTTTTTTCT

              *     
        125 TTATTTTT
          1 TTCTTTTT

        133 ACCTTCAAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  15    2  0.09
  16   18  0.82
  17    2  0.09

ACGTcount: A:0.05, C:0.10, G:0.03, T:0.82


Consensus pattern (15 bp):   
TTCTTTTTTTTTTCT

Found at i:123 original size:12 final size:12

Alignment explanation


    Indices: 103--132  Score: 51
    Period size: 12  Copynumber: 2.4  Consensus size: 12

         93 TTCTTTTTGT

                         
        103 TTTTCTTTCTTTA
          1 TTTT-TTTCTTTA

                        
        116 TTTTTTTCTTTA
          1 TTTTTTTCTTTA

                 
        128 TTTTT
          1 TTTTT

        133 ACCTTCAAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   13  0.76
  13    4  0.24

ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83


Consensus pattern (12 bp):   
TTTTTTTCTTTA
Done.