Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007099.1 Kokia drynarioides strain JFW-HI SEQ_121709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2087
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35


Found at i:641 original size:29 final size:30

Alignment explanation


    Indices: 607--669  Score: 85
    Period size: 29  Copynumber: 2.1  Consensus size: 30

        597 GATTTATATA

                     *                     
        607 ATTTTCGTATTTAATTT-TTTCTTTAG-ATT
          1 ATTTTCGTAATTAATTTATTT-TTTAGAATT

                                    *     
        636 ATTTTCGTAATTAATTTATTTTTTTGAATT
          1 ATTTTCGTAATTAATTTATTTTTTAGAATT

                
        666 ATTT
          1 ATTT

        670 AAAAAACTCA


Statistics
Matches: 30,  Mismatches: 2, Indels: 3
        0.86            0.06        0.09

Matches are distributed among these distances:
  29   20  0.67
  30   10  0.33

ACGTcount: A:0.24, C:0.05, G:0.06, T:0.65


Consensus pattern (30 bp):   
ATTTTCGTAATTAATTTATTTTTTAGAATT

Done.