Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007105.1 Kokia drynarioides strain JFW-HI SEQ_121715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2355
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37


Found at i:1550 original size:21 final size:21

Alignment explanation


    Indices: 1526--1568  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1516 TTTCAAATTG

                                 
       1526 TAGTTTAAAAAAATAATAAAA
          1 TAGTTTAAAAAAATAATAAAA

                                 
       1547 TAGTTTAAAAAAATAATAAAA
          1 TAGTTTAAAAAAATAATAAAA

             
       1568 T
          1 T

       1569 TCAACCCCGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30


Consensus pattern (21 bp):   
TAGTTTAAAAAAATAATAAAA
Done.