Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007109.1 Kokia drynarioides strain JFW-HI SEQ_121719, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3058
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:2249 original size:113 final size:113

Alignment explanation


    Indices: 2112--2338  Score: 393
    Period size: 113  Copynumber: 2.0  Consensus size: 113

       2102 ACTTAGCTAC

                                                                  *      *   
       2112 TAACTACTAAAAATGTAATAATTAATTATAAAATGCCTAGAAAACAATATCCTTGGGTGCGGAAA
          1 TAACTACTAAAAATGTAATAATTAATTATAAAATGCCTAGAAAACAATATCCTTAGGTGCGAAAA

                                         *                   
       2177 TATCCCAAAATAACTACTACATTTGACGTTAGGTT-AGACATCCCAAAA
         66 TATCCCAAAATAACTACTACATTTGACGTCA-GTTCAGACATCCCAAAA

                    *                                                        
       2225 TAACTACTGAAAATGTAATAATTAATTATAAAATGCCTAGAAAACAATATCCTTAGGTGCGAAAA
          1 TAACTACTAAAAATGTAATAATTAATTATAAAATGCCTAGAAAACAATATCCTTAGGTGCGAAAA

                                                        *   
       2290 TATCCCAAAATAACTACTACATTTGACGTCAGTTCAGACATCCCCAAA
         66 TATCCCAAAATAACTACTACATTTGACGTCAGTTCAGACATCCCAAAA

             
       2338 T
          1 T

       2339 GCAAAAGTGC


Statistics
Matches: 108,  Mismatches: 5, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
 112    3  0.03
 113  105  0.97

ACGTcount: A:0.43, C:0.18, G:0.11, T:0.27


Consensus pattern (113 bp):   
TAACTACTAAAAATGTAATAATTAATTATAAAATGCCTAGAAAACAATATCCTTAGGTGCGAAAA
TATCCCAAAATAACTACTACATTTGACGTCAGTTCAGACATCCCAAAA
Done.