Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007114.1 Kokia drynarioides strain JFW-HI SEQ_121724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4568
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:675 original size:42 final size:42

Alignment explanation


    Indices: 628--780  Score: 243
    Period size: 42  Copynumber: 3.6  Consensus size: 42

        618 TATGCTCTAT

                    *                  *              
        628 CGAGACATAAGTCTTCCTTTAATCATATTCTCATTCTCATCC
          1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC

                    *            *                    
        670 CGAGACATTAGTCTTCCTTTATTCATAATCTCATTCTCATCC
          1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC

            *                               *         
        712 TGAGACATGAGTCTTCCTTTAATCATAATCTCTTTCTCATCC
          1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC

                      *                
        754 CGAGACATGATTCTTCCTTTAATCATA
          1 CGAGACATGAGTCTTCCTTTAATCATA

        781 TAAACTTTTT


Statistics
Matches: 102,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  42  102  1.00

ACGTcount: A:0.25, C:0.27, G:0.08, T:0.39


Consensus pattern (42 bp):   
CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC

Found at i:2918 original size:48 final size:47

Alignment explanation


    Indices: 2848--2940  Score: 143
    Period size: 48  Copynumber: 2.0  Consensus size: 47

       2838 AAATGTGTAT

                                      *                     
       2848 ATCTTAATGGCTCTTGACTATGTCTCGAAATGGATC-AAAGCAATTGC
          1 ATCTTAATGGCTCTTGACTATGTCTCAAAATGGATCGAAA-CAATTGC

                              *                           
       2895 ATCTTAATTGGCTCTTGATTATGTCTCAAAATGGATCGAAACAATT
          1 ATCTTAA-TGGCTCTTGACTATGTCTCAAAATGGATCGAAACAATT

       2941 ACGGTGCCAA


Statistics
Matches: 42,  Mismatches: 2, Indels: 3
        0.89            0.04        0.06

Matches are distributed among these distances:
  47    7  0.17
  48   32  0.76
  49    3  0.07

ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34


Consensus pattern (47 bp):   
ATCTTAATGGCTCTTGACTATGTCTCAAAATGGATCGAAACAATTGC
Done.