Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007115.1 Kokia drynarioides strain JFW-HI SEQ_121725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8387
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:3644 original size:14 final size:14

Alignment explanation


    Indices: 3625--3652  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       3615 ACAAACATTC

                          
       3625 GTGAACGTTTGGAT
          1 GTGAACGTTTGGAT

                          
       3639 GTGAACGTTTGGAT
          1 GTGAACGTTTGGAT

       3653 CGAGGGGGAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36


Consensus pattern (14 bp):   
GTGAACGTTTGGAT

Found at i:7347 original size:24 final size:24

Alignment explanation


    Indices: 7297--7350  Score: 65
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       7287 TTTCGCTTCA

                         *      * * 
       7297 TTTTCTTGGCAAGGCATTGATGTG
          1 TTTTCTTGGCAAGACATTGAAGGG

                                     
       7321 TTTTCTTGGCAAGAC-TTCGAAGGG
          1 TTTTCTTGGCAAGACATT-GAAGGG

                  
       7345 TTTTCT
          1 TTTTCT

       7351 ATTGAAAAAG


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  23    2  0.08
  24   24  0.92

ACGTcount: A:0.17, C:0.15, G:0.26, T:0.43


Consensus pattern (24 bp):   
TTTTCTTGGCAAGACATTGAAGGG
Done.