Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007124.1 Kokia drynarioides strain JFW-HI SEQ_121735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39


Found at i:392 original size:12 final size:13

Alignment explanation


    Indices: 375--404  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        365 GATTGAGCAT

                         
        375 AATAATAATAAA-
          1 AATAATAATAAAC

                         
        387 AATAATAATAAAC
          1 AATAATAATAAAC

                 
        400 AATAA
          1 AATAA

        405 ACACCTAAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23


Consensus pattern (13 bp):   
AATAATAATAAAC

Found at i:883 original size:21 final size:21

Alignment explanation


    Indices: 857--897  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        847 TATTTATTTA

                                  
        857 TTTTT-ATTTAAAATAATTAAT
          1 TTTTTAATTTAAAA-AATTAAT

                      *         
        878 TTTTTAATTTTAAAAATTAA
          1 TTTTTAATTTAAAAAATTAA

        898 AAAATTTAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   11  0.61
  22    7  0.39

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (21 bp):   
TTTTTAATTTAAAAAATTAAT
Done.