Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007125.1 Kokia drynarioides strain JFW-HI SEQ_121737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39


Found at i:391 original size:12 final size:13

Alignment explanation


    Indices: 374--403  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        364 GATTGAGCAT

                         
        374 AATAATAATAAA-
          1 AATAATAATAAAC

                         
        386 AATAATAATAAAC
          1 AATAATAATAAAC

                 
        399 AATAA
          1 AATAA

        404 ACACCTAAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23


Consensus pattern (13 bp):   
AATAATAATAAAC

Found at i:874 original size:21 final size:21

Alignment explanation


    Indices: 848--888  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        838 TATTTATTTA

                                  
        848 TTTTT-ATTTAAAATAATTAAT
          1 TTTTTAATTTAAAA-AATTAAT

                      *         
        869 TTTTTAATTTTAAAAATTAA
          1 TTTTTAATTTAAAAAATTAA

        889 ATAATTTAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   11  0.61
  22    7  0.39

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (21 bp):   
TTTTTAATTTAAAAAATTAAT
Done.