Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007127.1 Kokia drynarioides strain JFW-HI SEQ_121739, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7314
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:7073 original size:14 final size:14

Alignment explanation


    Indices: 7027--7071  Score: 83
    Period size: 14  Copynumber: 3.3  Consensus size: 14

       7017 TTTAATTTGT

                          
       7027 ATTTATCTTTTTAG
          1 ATTTATCTTTTTAG

                          
       7041 ATTTATCTTTTTAG
          1 ATTTATCTTTTTAG

                          
       7055 ATTTATC-TTTTAG
          1 ATTTATCTTTTTAG

                
       7068 ATTT
          1 ATTT

       7072 TAAAGTGGAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  13   10  0.32
  14   21  0.68

ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64


Consensus pattern (14 bp):   
ATTTATCTTTTTAG
Done.