Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007131.1 Kokia drynarioides strain JFW-HI SEQ_121743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5632
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:877 original size:2 final size:2

Alignment explanation


    Indices: 865--900  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

        855 AAGAAGCAGA

                                                                    
        865 AG AG AG A- AG AG AG A- AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

        901 GGGGGGGACA


Statistics
Matches: 32,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   1    2  0.06
   2   30  0.94

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:900 original size:14 final size:14

Alignment explanation


    Indices: 865--900  Score: 58
    Period size: 13  Copynumber: 2.7  Consensus size: 14

        855 AAGAAGCAGA

                          
        865 AGAGAGA-AGAGAG
          1 AGAGAGAGAGAGAG

                          
        878 A-AGAGAGAGAGAG
          1 AGAGAGAGAGAGAG

                      
        891 AGAGAGAGAG
          1 AGAGAGAGAG

        901 GGGGGGGACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  12    5  0.24
  13    8  0.38
  14    8  0.38

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (14 bp):   
AGAGAGAGAGAGAG
Done.