Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007135.1 Kokia drynarioides strain JFW-HI SEQ_121747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1662
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39


Found at i:530 original size:27 final size:28

Alignment explanation


    Indices: 498--557  Score: 68
    Period size: 27  Copynumber: 2.2  Consensus size: 28

        488 ATTAAAATAA

                    **        *       * 
        498 TTTTAACTTTTAAATTAAGACAA-ATGT
          1 TTTTAACTCATAAATTAAAACAATATAT

                  *                     
        525 TTTTAAGTCATAAATTAAAACAATATAT
          1 TTTTAACTCATAAATTAAAACAATATAT

                 
        553 TTTTA
          1 TTTTA

        558 TTTTGATCAA


Statistics
Matches: 27,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  27   19  0.70
  28    8  0.30

ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45


Consensus pattern (28 bp):   
TTTTAACTCATAAATTAAAACAATATAT
Done.