Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007136.1 Kokia drynarioides strain JFW-HI SEQ_121748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2616
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38


Found at i:825 original size:27 final size:28

Alignment explanation


    Indices: 768--827  Score: 68
    Period size: 27  Copynumber: 2.2  Consensus size: 28

        758 TTGATCAAAA

                  *       *        **   
        768 TAAAAATATATTGTTTTAATTTATGACT
          1 TAAAAACATATTGTCTTAATTTAAAACT

                                      * 
        796 TAAAAACAT-TTGTCTTAATTTAAAAGT
          1 TAAAAACATATTGTCTTAATTTAAAACT

                 
        823 TAAAA
          1 TAAAA

        828 TTATTTTAAT


Statistics
Matches: 27,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  27   19  0.70
  28    8  0.30

ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43


Consensus pattern (28 bp):   
TAAAAACATATTGTCTTAATTTAAAACT
Done.