Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007137.1 Kokia drynarioides strain JFW-HI SEQ_121749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2318
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34


Found at i:44 original size:13 final size:13

Alignment explanation


    Indices: 23--56  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

         13 ACAATATAAT

                         
         23 AATAATAATCCTA
          1 AATAATAATCCTA

                *        
         36 AATATTAATCCTA
          1 AATAATAATCCTA

              *     
         49 AAAAATAA
          1 AATAATAA

         57 AGTTTAAATT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29


Consensus pattern (13 bp):   
AATAATAATCCTA

Found at i:529 original size:15 final size:17

Alignment explanation


    Indices: 497--530  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        487 CTATAATGGC

                             
        497 AAAAGAGTGAAGAGTAA
          1 AAAAGAGTGAAGAGTAA

                             
        514 AAAAGA-TGAAGA-TAA
          1 AAAAGAGTGAAGAGTAA

              
        529 AA
          1 AA

        531 CTAAACCCCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    5  0.29
  16    6  0.35
  17    6  0.35

ACGTcount: A:0.65, C:0.00, G:0.24, T:0.12


Consensus pattern (17 bp):   
AAAAGAGTGAAGAGTAA
Done.