Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007143.1 Kokia drynarioides strain JFW-HI SEQ_121755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3764
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:3330 original size:23 final size:24

Alignment explanation


    Indices: 3303--3355  Score: 65
    Period size: 23  Copynumber: 2.2  Consensus size: 24

       3293 AATTTGGTAA

                                    
       3303 TTTTATAAAATA-TATT-TAAAAT
          1 TTTTATAAAATATTATTATAAAAT

                    **               
       3325 TGTTTATATTATATTATTATAAAAT
          1 T-TTTATAAAATATTATTATAAAAT

                  
       3350 TTTTAT
          1 TTTTAT

       3356 TTTAAATTCA


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  22    1  0.04
  23    9  0.35
  24    9  0.35
  25    7  0.27

ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57


Consensus pattern (24 bp):   
TTTTATAAAATATTATTATAAAAT
Done.