Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007149.1 Kokia drynarioides strain JFW-HI SEQ_121761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 27361
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:13163 original size:30 final size:32

Alignment explanation


    Indices: 13127--13193  Score: 88
    Period size: 31  Copynumber: 2.2  Consensus size: 32

      13117 TTGGGTCAAA

                                          * 
      13127 ACTAAAAAATTAA-AA-TTAAAAAGTATAGGG
          1 ACTAAAAAATTAACAATTTAAAAAGTATAGAG

                                             
      13157 ACT--AAAATTAACTAATTTAAAAAGTATAGAG
          1 ACTAAAAAATTAAC-AATTTAAAAAGTATAGAG

                  
      13188 ACTAAA
          1 ACTAAA

      13194 TTTGATTAAA


Statistics
Matches: 31,  Mismatches: 1, Indels: 7
        0.79            0.03        0.18

Matches are distributed among these distances:
  28    8  0.26
  30    5  0.16
  31   17  0.55
  33    1  0.03

ACGTcount: A:0.58, C:0.06, G:0.10, T:0.25


Consensus pattern (32 bp):   
ACTAAAAAATTAACAATTTAAAAAGTATAGAG

Found at i:13208 original size:31 final size:31

Alignment explanation


    Indices: 13139--13209  Score: 97
    Period size: 31  Copynumber: 2.3  Consensus size: 31

      13129 TAAAAAATTA

                            *              
      13139 AAATTAAAAAGTATAGGGACTAAAATTAACT
          1 AAATTAAAAAGTATAGAGACTAAAATTAACT

              *                     *  * * 
      13170 AATTTAAAAAGTATAGAGACTAAATTTGATT
          1 AAATTAAAAAGTATAGAGACTAAAATTAACT

                     
      13201 AAATTAAAA
          1 AAATTAAAA

      13210 TATAAAAACT


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.55, C:0.04, G:0.11, T:0.30


Consensus pattern (31 bp):   
AAATTAAAAAGTATAGAGACTAAAATTAACT
Done.