Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007155.1 Kokia drynarioides strain JFW-HI SEQ_121767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3587
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33


Found at i:302 original size:27 final size:27

Alignment explanation


    Indices: 272--331  Score: 77
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        262 GACATGTAAT

                                  *     
        272 ATTTTTAATTAAAT-AAATTTTTTTATA
          1 ATTTTT-ATTAAATAAAATTTTATTATA

                *                      
        299 ATTTATATTAAATAAAATTTTATTATA
          1 ATTTTTATTAAATAAAATTTTATTATA

            *     
        326 TTTTTT
          1 ATTTTT

        332 CATCTCCTTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  26    7  0.25
  27   21  0.75

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (27 bp):   
ATTTTTATTAAATAAAATTTTATTATA

Found at i:2766 original size:30 final size:30

Alignment explanation


    Indices: 2715--2783  Score: 93
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       2705 CTTACGAGAA

                                          
       2715 CGTTCAGGAACTTGAGAAGACTAGATATCT
          1 CGTTCAGGAACTTGAGAAGACTAGATATCT

                *    *    *       *       
       2745 CGTTTAGGAGCTTGGGAAGACTTGATATCT
          1 CGTTCAGGAACTTGAGAAGACTAGATATCT

             *       
       2775 CATTCAGGA
          1 CGTTCAGGA

       2784 TCTTAAGATT


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29


Consensus pattern (30 bp):   
CGTTCAGGAACTTGAGAAGACTAGATATCT
Done.