Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007163.1 Kokia drynarioides strain JFW-HI SEQ_121775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1317
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38


Found at i:1073 original size:8 final size:7

Alignment explanation


    Indices: 1056--1096  Score: 55
    Period size: 7  Copynumber: 5.9  Consensus size: 7

       1046 TTTTTTATTC

                   
       1056 TAAATTT
          1 TAAATTT

                   
       1063 TAAATTT
          1 TAAATTT

             *  ** 
       1070 TTAACCT
          1 TAAATTT

                   
       1077 TAAATTT
          1 TAAATTT

                   
       1084 TAAATTT
          1 TAAATTT

                  
       1091 TAAATT
          1 TAAATT

       1097 CGAACTCGGG


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54


Consensus pattern (7 bp):   
TAAATTT

Done.