Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007169.1 Kokia drynarioides strain JFW-HI SEQ_121781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3317
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35


Found at i:2046 original size:8 final size:10

Alignment explanation


    Indices: 2017--2047  Score: 53
    Period size: 10  Copynumber: 3.1  Consensus size: 10

       2007 TTCCATGCAT

                      
       2017 TCGAAATCTC
          1 TCGAAATCTC

                      
       2027 TCGAAATCTC
          1 TCGAAATCTC

                 *    
       2037 TCGAATTCTC
          1 TCGAAATCTC

             
       2047 T
          1 T

       2048 TCTTATTGTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35


Consensus pattern (10 bp):   
TCGAAATCTC
Done.