genome.fa.s717.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000717.1 Kokia drynarioides strain JFW-HI SEQ_111732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125265

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352--1404	27	1.9	28	88	11	83	26	5	3	64	1.33
1786--1850	28	2.2	32	83	10	84	30	0	3	66	1.07
1821--1859	14	2.9	14	88	3	53	30	0	0	69	0.89
3950--3994	17	2.6	18	82	3	56	40	4	2	53	1.33
4784--4839	21	2.7	20	78	10	58	55	1	3	39	1.28
5798--6280	29	16.5	29	78	11	454	33	29	4	31	1.78
5798--6280	117	4.1	116	83	7	536	33	29	4	31	1.78
5798--6280	59	8.2	59	85	6	535	33	29	4	31	1.78
5789--6280	88	5.6	87	78	12	449	34	29	4	31	1.78
5798--6402	117	5.2	115	80	8	487	33	29	5	31	1.79
18367--18475	11	9.3	12	67	16	50	42	2	1	53	1.26
18367--18475	6	18.7	6	67	16	50	42	2	1	53	1.26
18353--18397	17	2.6	18	82	3	56	40	4	2	53	1.33
18388--18433	17	2.6	17	89	6	65	30	2	0	67	1.03
19244--19299	21	2.7	20	83	10	67	55	0	3	41	1.17
20261--20635	29	12.8	28	76	13	319	34	31	3	31	1.75
20260--20598	59	5.7	59	85	6	354	35	31	2	30	1.73
20291--20665	88	4.2	88	78	8	377	34	31	3	30	1.75
20442--20815	117	3.2	117	76	11	284	31	30	7	30	1.84
27445--27493	9	5.2	9	77	18	55	53	0	0	46	1.00
27437--27493	20	3.0	20	78	14	66	52	0	1	45	1.11
27766--27801	17	2.1	17	89	0	54	50	27	16	5	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27771--27809	17	2.3	17	86	0	51	48	35	10	5	1.59
31136--31395	129	2.0	129	99	0	511	23	17	23	35	1.95
33009--33064	20	2.8	20	91	0	85	30	8	28	32	1.88
35056--35205	60	2.5	57	81	11	167	31	12	11	44	1.78
35056--35205	58	2.5	60	83	9	182	31	12	11	44	1.78
35961--36119	47	3.2	47	68	14	149	42	2	6	48	1.42
35961--36163	101	2.0	101	100	0	406	44	2	6	45	1.45
36002--36159	48	3.2	48	67	21	144	44	3	7	44	1.48
37801--37845	21	2.1	22	83	4	56	37	0	2	60	1.09
37970--38016	20	2.3	20	81	3	58	27	4	2	65	1.22
38061--38102	18	2.3	18	87	0	57	19	4	7	69	1.31
38091--38163	36	2.0	36	84	5	94	34	5	4	56	1.42
39269--39389	30	4.1	30	91	2	181	28	5	2	62	1.31
39274--39389	59	2.0	60	91	1	189	29	5	2	62	1.30
39274--39408	59	2.3	55	83	10	162	30	5	2	62	1.29
40246--40358	55	2.1	55	80	6	122	50	14	12	23	1.76
40309--40482	59	3.1	54	76	13	163	39	15	13	31	1.87
40355--40567	59	3.6	57	75	10	180	37	13	16	32	1.88
40418--40534	61	1.9	63	82	7	150	35	13	15	35	1.87
40360--40602	120	2.0	122	80	6	280	36	14	15	32	1.89
40584--40790	55	3.9	54	72	14	171	36	15	15	32	1.90
41945--42024	32	2.5	33	83	4	99	62	6	3	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46629--46671	14	2.8	16	79	17	54	48	0	0	51	1.00
47541--47583	19	2.2	20	87	4	61	60	2	6	30	1.35
47541--47588	19	2.4	19	86	6	60	60	2	6	31	1.33
67606--67654	19	2.7	18	78	6	53	34	4	4	57	1.37
68634--68670	18	2.1	18	94	0	65	64	2	0	32	1.07
73939--74044	54	2.0	52	94	3	185	58	11	3	26	1.49
83250--83308	31	1.9	31	89	0	91	38	15	13	32	1.86
85512--85583	19	3.5	20	75	19	69	55	2	0	41	1.14
86300--86416	52	2.2	54	80	7	134	21	30	0	47	1.57
86384--86448	34	1.9	34	90	0	103	18	23	1	56	1.49
89643--89671	6	4.8	6	100	0	58	13	0	68	17	1.20
95713--95758	16	2.8	16	81	12	58	47	0	8	43	1.34
95697--95752	17	3.4	17	80	5	60	57	0	7	35	1.26
96307--96356	20	2.5	20	90	6	75	34	0	10	56	1.33
96302--96356	19	2.9	19	89	5	76	36	0	9	54	1.32
108022--108061	21	1.9	21	84	0	53	47	2	0	50	1.14
110619--110669	26	1.9	27	84	11	70	64	1	3	29	1.22
110628--110680	19	2.8	19	75	11	54	67	1	3	26	1.17
114132--114171	20	2.0	20	90	9	64	45	12	27	15	1.82
118087--118116	11	2.6	11	94	5	51	36	0	0	63	0.95
120882--120942	26	2.3	26	82	0	77	59	4	0	36	1.19
124794--124873	34	2.4	33	83	6	97	42	1	5	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124800--124873	17	4.4	17	87	3	87	41	1	4	52	1.28

Tables:   1

The End!