Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007178.1 Kokia drynarioides strain JFW-HI SEQ_121791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8012
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Found at i:4073 original size:21 final size:21

Alignment explanation


    Indices: 4044--4085  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4034 TCTTCTAAAG

                                 
       4044 ATTAAATATCAAATCTAAGAT
          1 ATTAAATATCAAATCTAAGAT

                *                
       4065 ATTACATATCAAATCTAAGAT
          1 ATTAAATATCAAATCTAAGAT

       4086 TGTCAATCTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33


Consensus pattern (21 bp):   
ATTAAATATCAAATCTAAGAT
Done.