Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007191.1 Kokia drynarioides strain JFW-HI SEQ_121805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6598
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34


Found at i:6351 original size:17 final size:17

Alignment explanation


    Indices: 6308--6375  Score: 70
    Period size: 17  Copynumber: 4.1  Consensus size: 17

       6298 TGTCTGGACC

                *            
       6308 TATTGGAAA-TTAAATT
          1 TATTTGAAATTTAAATT

                 *        *  
       6324 T-TTTTAAATTTAAGTT
          1 TATTTGAAATTTAAATT

                             
       6340 TATTTGAAATTTAAATT
          1 TATTTGAAATTTAAATT

                      *       
       6357 TATTAT-AAAATTAAATT
          1 TATT-TGAAATTTAAATT

              
       6374 TA
          1 TA

       6376 GAAAGTCCAA


Statistics
Matches: 43,  Mismatches: 6, Indels: 5
        0.80            0.11        0.09

Matches are distributed among these distances:
  15    5  0.12
  16    8  0.19
  17   29  0.67
  18    1  0.02

ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51


Consensus pattern (17 bp):   
TATTTGAAATTTAAATT
Done.