Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007196.1 Kokia drynarioides strain JFW-HI SEQ_121810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2232
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:1051 original size:15 final size:14

Alignment explanation


    Indices: 1027--1057  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1017 TTACTAATTG

                          
       1027 TTATTATAACTCCC
          1 TTATTATAACTCCC

                           
       1041 TTATCTATAACTCCC
          1 TTAT-TATAACTCCC

              
       1056 TT
          1 TT

       1058 GATGTGAGCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.25
  15   12  0.75

ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45


Consensus pattern (14 bp):   
TTATTATAACTCCC
Done.