Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007197.1 Kokia drynarioides strain JFW-HI SEQ_121811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6945
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:3692 original size:74 final size:74

Alignment explanation


    Indices: 3597--3746  Score: 246
    Period size: 74  Copynumber: 2.0  Consensus size: 74

       3587 CTTTACAAAA

                        *                          *  *               *      
       3597 TGAAAGTGAACAGCCATCATTCATCATTCATAAATGAATGTGTTGATTAATTTAAAAAGTCTTGA
          1 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATCTGGTGATTAATTTAAAAACTCTTGA

                     
       3662 ATGAAACAT
         66 ATGAAACAT

                *                                           *                
       3671 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATCTGGTGATTCATTTAAAAACTCTTGA
          1 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATCTGGTGATTAATTTAAAAACTCTTGA

                     
       3736 ATGAAACAT
         66 ATGAAACAT

              
       3745 TG
          1 TG

       3747 TATCCCTCCA


Statistics
Matches: 70,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  74   70  1.00

ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33


Consensus pattern (74 bp):   
TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATCTGGTGATTAATTTAAAAACTCTTGA
ATGAAACAT
Done.