Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007198.1 Kokia drynarioides strain JFW-HI SEQ_121812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4261
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33


Found at i:3926 original size:18 final size:18

Alignment explanation


    Indices: 3903--3939  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       3893 ACAGTTCATA

                              
       3903 TCACTTTCAATTCCAATT
          1 TCACTTTCAATTCCAATT

                     *  *     
       3921 TCACTTTCACTTTCAATT
          1 TCACTTTCAATTCCAATT

             
       3939 T
          1 T

       3940 TGATCACCAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49


Consensus pattern (18 bp):   
TCACTTTCAATTCCAATT
Done.