Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007209.1 Kokia drynarioides strain JFW-HI SEQ_121823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3760
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36


Found at i:2931 original size:21 final size:21

Alignment explanation


    Indices: 2905--2956  Score: 104
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       2895 CATGATCATT

                                 
       2905 ACGACATCGAATATGTTCGTC
          1 ACGACATCGAATATGTTCGTC

                                 
       2926 ACGACATCGAATATGTTCGTC
          1 ACGACATCGAATATGTTCGTC

                      
       2947 ACGACATCGA
          1 ACGACATCGA

       2957 GACCAGGTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25


Consensus pattern (21 bp):   
ACGACATCGAATATGTTCGTC
Done.