Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007211.1 Kokia drynarioides strain JFW-HI SEQ_121825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3574
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26


Found at i:201 original size:14 final size:14

Alignment explanation


    Indices: 182--210  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        172 AGCAAAGTGC

                          
        182 ACTTTCGGAGCCAT
          1 ACTTTCGGAGCCAT

                          
        196 ACTTTCGGAGCCAT
          1 ACTTTCGGAGCCAT

             
        210 A
          1 A

        211 TCAGGAAAGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28


Consensus pattern (14 bp):   
ACTTTCGGAGCCAT
Done.