Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007213.1 Kokia drynarioides strain JFW-HI SEQ_121827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4020
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:3648 original size:5 final size:5

Alignment explanation


    Indices: 3615--3645  Score: 53
    Period size: 5  Copynumber: 6.2  Consensus size: 5

       3605 CTGCTCACCC

                                           *     
       3615 CCACA CCACA CCACA CCACA CCACA CGACA C
          1 CCACA CCACA CCACA CCACA CCACA CCACA C

       3646 GACTTGTGGA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   5   25  1.00

ACGTcount: A:0.39, C:0.58, G:0.03, T:0.00


Consensus pattern (5 bp):   
CCACA
Done.